Cluster no. 300
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Cluster is part of supercluster: 197
Cluster characteristics:
| size |
191 |
| size_real |
191 |
| ecount |
697 |
| supercluster |
197 |
| annotations_summary |
|
| pair_completeness |
0.605042016806723 |
| pbs_score |
None |
| TR_score |
None |
| TR_monomer_length |
None |
| loop_index |
0.00523560209424084 |
| satellite_probability |
3.4734978037751e-21 |
| consensus |
None |
| TAREAN_annotation |
Other |
| orientation_score |
1 |
comparative analysis:
Comparative analysis - species read counts:
| Species |
Read count |
| S8 |
2 |
| S5 |
0 |
| S4 |
0 |
| S7 |
6 |
| S9 |
7 |
| S6 |
0 |
| S2 |
51 |
| S1 |
63 |
| S3 |
62 |
comparative analysis - number of edges between species:
|
S8 |
S5 |
S4 |
S7 |
S9 |
S6 |
S2 |
S1 |
S3 |
| S8 |
0.0 |
0 |
0 |
0.0 |
0.0 |
0 |
0.0 |
0.5 |
0.5 |
| S5 |
0.0 |
0 |
0 |
0.0 |
0.0 |
0 |
0.0 |
0.0 |
0.0 |
| S4 |
0.0 |
0 |
0 |
0.0 |
0.0 |
0 |
0.0 |
0.0 |
0.0 |
| S7 |
0.0 |
0 |
0 |
0.0 |
0.5 |
0 |
1.0 |
2.0 |
1.5 |
| S9 |
0.0 |
0 |
0 |
0.5 |
4.0 |
0 |
3.0 |
4.5 |
3.5 |
| S6 |
0.0 |
0 |
0 |
0.0 |
0.0 |
0 |
0.0 |
0.0 |
0.0 |
| S2 |
0.0 |
0 |
0 |
1.0 |
3.0 |
0 |
44.0 |
60.5 |
68.0 |
| S1 |
0.5 |
0 |
0 |
2.0 |
4.5 |
0 |
60.5 |
79.0 |
95.0 |
| S3 |
0.5 |
0 |
0 |
1.5 |
3.5 |
0 |
68.0 |
95.0 |
89.0 |
comparative analysis - observed/expected number of edges between species
|
S8 |
S5 |
S4 |
S7 |
S9 |
S6 |
S2 |
S1 |
S3 |
| S8 |
0.00 |
NA |
NA |
0.000 |
0.000 |
NA |
0.000 |
1.440 |
1.350 |
| S5 |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
| S4 |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
| S7 |
0.00 |
NA |
NA |
0.000 |
4.500 |
NA |
0.790 |
1.150 |
0.812 |
| S9 |
0.00 |
NA |
NA |
4.500 |
11.600 |
NA |
0.764 |
0.838 |
0.611 |
| S6 |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
| S2 |
0.00 |
NA |
NA |
0.790 |
0.764 |
NA |
0.984 |
0.989 |
1.040 |
| S1 |
1.44 |
NA |
NA |
1.150 |
0.838 |
NA |
0.989 |
0.944 |
1.060 |
| S3 |
1.35 |
NA |
NA |
0.812 |
0.611 |
NA |
1.040 |
1.060 |
0.936 |
protein domains:
No protein domains detected
protein domains:
Reads annotation summary
No similarity hits to repeat databases found
clusters connected through mates:
| Cluster |
Number of shared
read pairs |
k |
|
| 222 |
8 |
0.0675 |
| 3720 |
2 |
0.0741 |
| 8570 |
2 |
0.0784 |
| 7 |
1 |
0.000684 |
| 125 |
1 |
0.00196 |
| 147 |
1 |
0.00216 |
| 1400 |
1 |
0.0364 |
| 9480 |
1 |
0.0392 |
|