Cluster no. 298

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Cluster is part of supercluster: 195

Cluster characteristics:

size 192
size_real 192
ecount 371
supercluster 195
annotations_summary
pair_completeness 0.246753246753247
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00520833333333333
satellite_probability 1.07807224686137e-20
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 0
S5 69
S4 63
S7 1
S9 0
S6 59
S2 0
S1 0
S3 0
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0 0.0 0.0 0.0 0 0.0 0 0 0
S5 0 41.0 45.5 0.5 0 31.0 0 0 0
S4 0 45.5 46.0 0.5 0 43.0 0 0 0
S7 0 0.5 0.5 0.0 0 0.5 0 0 0
S9 0 0.0 0.0 0.0 0 0.0 0 0 0
S6 0 31.0 43.0 0.5 0 42.0 0 0 0
S2 0 0.0 0.0 0.0 0 0.0 0 0 0
S1 0 0.0 0.0 0.0 0 0.0 0 0 0
S3 0 0.0 0.0 0.0 0 0.0 0 0 0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 NA NA NA NA NA NA NA NA NA
S5 NA 1.090 1.060 1.050 NA 0.837 NA NA NA
S4 NA 1.060 0.936 0.916 NA 1.010 NA NA NA
S7 NA 1.050 0.916 0.000 NA 1.060 NA NA NA
S9 NA NA NA NA NA NA NA NA NA
S6 NA 0.837 1.010 1.060 NA 1.150 NA NA NA
S2 NA NA NA NA NA NA NA NA NA
S1 NA NA NA NA NA NA NA NA NA
S3 NA NA NA NA NA NA NA NA NA

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters connected through mates:

Cluster Number of shared
read pairs		 k
211 13 0.0546
4520 3 0.0492
1600 2 0.0323
1640 2 0.0308
3300 2 0.0333
4980 2 0.0328
9610 2 0.0333
33400 2 0.0339
14 1 0.000601
29 1 0.000912
86 1 0.00179
2580 1 0.0161
5390 1 0.0167
5780 1 0.0165
6500 1 0.0168
27900 1 0.0169
32900 1 0.0169
48200 1 0.0169
57500 1 0.0169
62200 1 0.0169
62500 1 0.0169

CL298 ----> CL211

image

No. of shared pairs: :13