Cluster no. 297
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Cluster is part of supercluster: 194
Cluster characteristics:
| size |
199 |
| size_real |
199 |
| ecount |
711 |
| supercluster |
194 |
| annotations_summary |
|
| pair_completeness |
0.24375 |
| pbs_score |
None |
| TR_score |
None |
| TR_monomer_length |
None |
| loop_index |
0.0050251256281407 |
| satellite_probability |
1.0516263740795e-20 |
| consensus |
None |
| TAREAN_annotation |
Other |
| orientation_score |
1 |
comparative analysis:
Comparative analysis - species read counts:
| Species |
Read count |
| S8 |
0 |
| S5 |
53 |
| S4 |
81 |
| S7 |
0 |
| S9 |
0 |
| S6 |
64 |
| S2 |
0 |
| S1 |
0 |
| S3 |
1 |
comparative analysis - number of edges between species:
|
S8 |
S5 |
S4 |
S7 |
S9 |
S6 |
S2 |
S1 |
S3 |
| S8 |
0 |
0.0 |
0.0 |
0 |
0 |
0.0 |
0 |
0 |
0.0 |
| S5 |
0 |
82.0 |
89.5 |
0 |
0 |
63.5 |
0 |
0 |
1.0 |
| S4 |
0 |
89.5 |
100.0 |
0 |
0 |
76.5 |
0 |
0 |
0.5 |
| S7 |
0 |
0.0 |
0.0 |
0 |
0 |
0.0 |
0 |
0 |
0.0 |
| S9 |
0 |
0.0 |
0.0 |
0 |
0 |
0.0 |
0 |
0 |
0.0 |
| S6 |
0 |
63.5 |
76.5 |
0 |
0 |
65.0 |
0 |
0 |
1.0 |
| S2 |
0 |
0.0 |
0.0 |
0 |
0 |
0.0 |
0 |
0 |
0.0 |
| S1 |
0 |
0.0 |
0.0 |
0 |
0 |
0.0 |
0 |
0 |
0.0 |
| S3 |
0 |
1.0 |
0.5 |
0 |
0 |
1.0 |
0 |
0 |
0.0 |
comparative analysis - observed/expected number of edges between species
|
S8 |
S5 |
S4 |
S7 |
S9 |
S6 |
S2 |
S1 |
S3 |
| S8 |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
| S5 |
NA |
1.050 |
1.010 |
NA |
NA |
0.929 |
NA |
NA |
1.210 |
| S4 |
NA |
1.010 |
1.000 |
NA |
NA |
0.991 |
NA |
NA |
0.534 |
| S7 |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
| S9 |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
| S6 |
NA |
0.929 |
0.991 |
NA |
NA |
1.090 |
NA |
NA |
1.380 |
| S2 |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
| S1 |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
| S3 |
NA |
1.210 |
0.534 |
NA |
NA |
1.380 |
NA |
NA |
0.000 |
protein domains:
No protein domains detected
protein domains:
Reads annotation summary
No similarity hits to repeat databases found
clusters with similarity:
| Cluster |
Number of similarity hits |
|
|
|
clusters connected through mates:
| Cluster |
Number of shared
read pairs |
k |
|
| 442 |
9 |
0.109 |
| 56 |
5 |
0.00734 |
| 55 |
3 |
0.00386 |
| 87 |
2 |
0.00293 |
| 1810 |
2 |
0.0303 |
| 3 |
1 |
0.000347 |
| 73 |
1 |
0.00153 |
| 211 |
1 |
0.00416 |
| 3790 |
1 |
0.0161 |
| 12400 |
1 |
0.0161 |
| 14100 |
1 |
0.0161 |
| 27500 |
1 |
0.0163 |
| 43800 |
1 |
0.0163 |
| 45700 |
1 |
0.0163 |
|