Cluster no. 296
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Cluster is part of supercluster: 193
Cluster characteristics:
| size |
203 |
| size_real |
203 |
| ecount |
1618 |
| supercluster |
193 |
| annotations_summary |
|
| pair_completeness |
0.526315789473684 |
| pbs_score |
None |
| TR_score |
None |
| TR_monomer_length |
None |
| loop_index |
0.645320197044335 |
| satellite_probability |
0.00578817247304655 |
| consensus |
None |
| TAREAN_annotation |
Other |
| orientation_score |
1 |
comparative analysis:
Comparative analysis - species read counts:
| Species |
Read count |
| S8 |
0 |
| S5 |
60 |
| S4 |
74 |
| S7 |
0 |
| S9 |
0 |
| S6 |
69 |
| S2 |
0 |
| S1 |
0 |
| S3 |
0 |
comparative analysis - number of edges between species:
|
S8 |
S5 |
S4 |
S7 |
S9 |
S6 |
S2 |
S1 |
S3 |
| S8 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| S5 |
0 |
141 |
172 |
0 |
0 |
152 |
0 |
0 |
0 |
| S4 |
0 |
172 |
234 |
0 |
0 |
202 |
0 |
0 |
0 |
| S7 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| S9 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| S6 |
0 |
152 |
202 |
0 |
0 |
191 |
0 |
0 |
0 |
| S2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| S1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| S3 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
comparative analysis - observed/expected number of edges between species
|
S8 |
S5 |
S4 |
S7 |
S9 |
S6 |
S2 |
S1 |
S3 |
| S8 |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
| S5 |
NA |
1.050 |
0.984 |
NA |
NA |
0.973 |
NA |
NA |
NA |
| S4 |
NA |
0.984 |
1.030 |
NA |
NA |
0.985 |
NA |
NA |
NA |
| S7 |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
| S9 |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
| S6 |
NA |
0.973 |
0.985 |
NA |
NA |
1.040 |
NA |
NA |
NA |
| S2 |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
| S1 |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
| S3 |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
protein domains:
No protein domains detected
protein domains:
Reads annotation summary
No similarity hits to repeat databases found
clusters with similarity:
| Cluster |
Number of similarity hits |
|
|
|
clusters connected through mates:
| Cluster |
Number of shared
read pairs |
k |
|
| 35 |
20 |
0.0198 |
| 1 |
15 |
0.00857 |
| 93 |
9 |
0.0131 |
| 6820 |
3 |
0.0882 |
| 76 |
1 |
0.00175 |
|
CL296 ----> CL35
No. of shared pairs: :20
CL296 ----> CL1
No. of shared pairs: :15