Cluster no. 294

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Cluster is part of supercluster: 191

Cluster characteristics:

size 206
size_real 206
ecount 2633
supercluster 191
annotations_summary
pair_completeness 0.537313432835821
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.490291262135922
satellite_probability 3.38548671757369e-05
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 0
S5 1
S4 0
S7 0
S9 0
S6 0
S2 85
S1 56
S3 64
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0 0.0 0 0 0 0 0.0 0 0
S5 0 0.0 0 0 0 0 6.5 5 7
S4 0 0.0 0 0 0 0 0.0 0 0
S7 0 0.0 0 0 0 0 0.0 0 0
S9 0 0.0 0 0 0 0 0.0 0 0
S6 0 0.0 0 0 0 0 0.0 0 0
S2 0 6.5 0 0 0 0 317.0 254 348
S1 0 5.0 0 0 0 0 254.0 199 258
S3 0 7.0 0 0 0 0 348.0 258 359
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 NA NA NA NA NA NA NA NA NA
S5 NA 0.000 NA NA NA NA 1.000 0.993 1.020
S4 NA NA NA NA NA NA NA NA NA
S7 NA NA NA NA NA NA NA NA NA
S9 NA NA NA NA NA NA NA NA NA
S6 NA NA NA NA NA NA NA NA NA
S2 NA 1.000 NA NA NA NA 0.974 1.010 1.020
S1 NA 0.993 NA NA NA NA 1.010 1.020 0.977
S3 NA 1.020 NA NA NA NA 1.020 0.977 0.999

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters connected through mates:

Cluster Number of shared
read pairs		 k
314 17 0.258
539 9 0.2
288 2 0.0435
2070 2 0.058
3150 2 0.0588
50 1 0.00416
148 1 0.00248
269 1 0.0131
2640 1 0.0308
6470 1 0.0299
17100 1 0.0308
55300 1 0.0312

CL294 ----> CL314

image

No. of shared pairs: :17