Cluster no. 292

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Cluster is part of supercluster: 189

Cluster characteristics:

size 211
size_real 211
ecount 508
supercluster 189
annotations_summary 82.94% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
6.64% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-CHDII
pair_completeness 0.49645390070922
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.004739336492891
satellite_probability 2.60623974767306e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 0
S5 1
S4 0
S7 0
S9 0
S6 0
S2 74
S1 73
S3 63
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0 0.0 0 0 0 0 0.0 0.0 0.0
S5 0 0.0 0 0 0 0 0.0 0.0 0.5
S4 0 0.0 0 0 0 0 0.0 0.0 0.0
S7 0 0.0 0 0 0 0 0.0 0.0 0.0
S9 0 0.0 0 0 0 0 0.0 0.0 0.0
S6 0 0.0 0 0 0 0 0.0 0.0 0.0
S2 0 0.0 0 0 0 0 66.0 63.5 53.5
S1 0 0.0 0 0 0 0 63.5 64.0 49.0
S3 0 0.5 0 0 0 0 53.5 49.0 45.0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 NA NA NA NA NA NA NA NA NA
S5 NA 0.00 NA NA NA NA 0.000 0.000 3.430
S4 NA NA NA NA NA NA NA NA NA
S7 NA NA NA NA NA NA NA NA NA
S9 NA NA NA NA NA NA NA NA NA
S6 NA NA NA NA NA NA NA NA NA
S2 NA 0.00 NA NA NA NA 1.000 0.999 1.000
S1 NA 0.00 NA NA NA NA 0.999 1.040 0.953
S3 NA 3.43 NA NA NA NA 1.000 0.953 1.040

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Tekay Ty3-CHDII Tekay Ty3-CHDII 14 0.066
Tekay Ty3-INT Tekay Ty3-INT 175 0.829

clusters connected through mates:

Cluster Number of shared
read pairs		 k
2410 9 0.222
321 6 0.0923
491 3 0.0606
18000 2 0.0541
30400 2 0.0548
35600 2 0.0548
7 1 0.000679
57 1 0.0012
3920 1 0.027
6630 1 0.027
9970 1 0.0274
14400 1 0.027
38200 1 0.0274
56300 1 0.0274