Cluster no. 290
Go back to cluster table
Cluster is part of supercluster: 187
Cluster characteristics:
| size |
219 |
| size_real |
219 |
| ecount |
1691 |
| supercluster |
187 |
| annotations_summary |
|
| pair_completeness |
0.542253521126761 |
| pbs_score |
None |
| TR_score |
None |
| TR_monomer_length |
None |
| loop_index |
0.136986301369863 |
| satellite_probability |
1.56657658776209e-14 |
| consensus |
None |
| TAREAN_annotation |
Other |
| orientation_score |
1 |
comparative analysis:
Comparative analysis - species read counts:
| Species |
Read count |
| S8 |
0 |
| S5 |
0 |
| S4 |
0 |
| S7 |
0 |
| S9 |
0 |
| S6 |
0 |
| S2 |
82 |
| S1 |
67 |
| S3 |
70 |
comparative analysis - number of edges between species:
|
S8 |
S5 |
S4 |
S7 |
S9 |
S6 |
S2 |
S1 |
S3 |
| S8 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| S5 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| S4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| S7 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| S9 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| S6 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| S2 |
0 |
0 |
0 |
0 |
0 |
0 |
259 |
214 |
186 |
| S1 |
0 |
0 |
0 |
0 |
0 |
0 |
214 |
151 |
154 |
| S3 |
0 |
0 |
0 |
0 |
0 |
0 |
186 |
154 |
175 |
comparative analysis - observed/expected number of edges between species
|
S8 |
S5 |
S4 |
S7 |
S9 |
S6 |
S2 |
S1 |
S3 |
| S8 |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
| S5 |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
| S4 |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
| S7 |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
| S9 |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
| S6 |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
| S2 |
NA |
NA |
NA |
NA |
NA |
NA |
1.010 |
1.060 |
0.927 |
| S1 |
NA |
NA |
NA |
NA |
NA |
NA |
1.060 |
0.950 |
0.976 |
| S3 |
NA |
NA |
NA |
NA |
NA |
NA |
0.927 |
0.976 |
1.120 |
protein domains:
No protein domains detected
protein domains:
Reads annotation summary
No similarity hits to repeat databases found
clusters with similarity:
| Cluster |
Number of similarity hits |
|
|
|
clusters connected through mates:
| Cluster |
Number of shared
read pairs |
k |
|
| 7 |
19 |
0.0129 |
| 30 |
19 |
0.0182 |
| 704 |
6 |
0.14 |
| 125 |
2 |
0.00386 |
| 3150 |
2 |
0.0563 |
| 42 |
1 |
0.00163 |
| 131 |
1 |
0.00268 |
| 275 |
1 |
0.0103 |
| 1660 |
1 |
0.0267 |
| 16400 |
1 |
0.0294 |
| 29900 |
1 |
0.0299 |
|
CL290 ----> CL7
No. of shared pairs: :19
CL290 ----> CL30
No. of shared pairs: :19