Cluster no. 289

Go back to cluster table

Cluster is part of supercluster: 186

Cluster characteristics:

size 220
size_real 220
ecount 993
supercluster 186
annotations_summary
pair_completeness 0.58273381294964
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00454545454545455
satellite_probability 1.00051650786948e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 0
S5 75
S4 71
S7 0
S9 0
S6 74
S2 0
S1 0
S3 0
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0 0 0 0 0 0 0 0 0
S5 0 97 116 0 0 105 0 0 0
S4 0 116 127 0 0 114 0 0 0
S7 0 0 0 0 0 0 0 0 0
S9 0 0 0 0 0 0 0 0 0
S6 0 105 114 0 0 98 0 0 0
S2 0 0 0 0 0 0 0 0 0
S1 0 0 0 0 0 0 0 0 0
S3 0 0 0 0 0 0 0 0 0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 NA NA NA NA NA NA NA NA NA
S5 NA 0.953 1.010 NA NA 1.030 NA NA NA
S4 NA 1.010 0.987 NA NA 1.000 NA NA NA
S7 NA NA NA NA NA NA NA NA NA
S9 NA NA NA NA NA NA NA NA NA
S6 NA 1.030 1.000 NA NA 0.965 NA NA NA
S2 NA NA NA NA NA NA NA NA NA
S1 NA NA NA NA NA NA NA NA NA
S3 NA NA NA NA NA NA NA NA NA

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters connected through mates:

Cluster Number of shared
read pairs		 k
117 16 0.0403
4900 3 0.0938
135 2 0.00797
10400 2 0.0645
17900 2 0.0656
81 1 0.00251
776 1 0.0274
1530 1 0.029
8610 1 0.0333
15800 1 0.0328
19600 1 0.0328
34200 1 0.0333
41900 1 0.0333
42400 1 0.0333
48600 1 0.0333

CL289 ----> CL117

image

No. of shared pairs: :16