Cluster no. 287

Cluster no. 287

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Cluster is part of supercluster: 184

Cluster characteristics:

size	221
size_real	221
ecount	685
supercluster	184
annotations_summary
pair_completeness	0.323353293413174
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00452488687782805
satellite_probability	1.08737944923628e-20
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	65
S5	1
S4	0
S7	78
S9	73
S6	2
S2	0
S1	2
S3	0

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	56.0	0.5	0	54.5	72.5	2.0	0	4	0
S5	0.5	0.0	0	0.0	0.5	0.0	0	0	0
S4	0.0	0.0	0	0.0	0.0	0.0	0	0	0
S7	54.5	0.0	0	73.0	74.0	1.5	0	3	0
S9	72.5	0.5	0	74.0	115.0	4.0	0	4	0
S6	2.0	0.0	0	1.5	4.0	0.0	0	0	0
S2	0.0	0.0	0	0.0	0.0	0.0	0	0	0
S1	4.0	0.0	0	3.0	4.0	0.0	0	0	0
S3	0.0	0.0	0	0.0	0.0	0.0	0	0	0

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	1.070	1.81	NA	0.956	0.971	0.964	NA	1.310	NA
S5	1.810	0.00	NA	0.000	1.270	0.000	NA	0.000	NA
S4	NA	NA	NA	NA	NA	NA	NA	NA	NA
S7	0.956	0.00	NA	1.180	0.911	0.665	NA	0.907	NA
S9	0.971	1.27	NA	0.911	1.080	1.350	NA	0.923	NA
S6	0.964	0.00	NA	0.665	1.350	0.000	NA	0.000	NA
S2	NA	NA	NA	NA	NA	NA	NA	NA	NA
S1	1.310	0.00	NA	0.907	0.923	0.000	NA	0.000	NA
S3	NA	NA	NA	NA	NA	NA	NA	NA	NA

protein domains:

No protein domains detected

protein domains:

Reads annotation summary

No similarity hits to repeat databases found

clusters with similarity:

Cluster	Number of similarity hits

4

10

clusters connected through mates:

Cluster	Number of shared read pairs	k

4	19	0.0115
2600	4	0.065
17	2	0.0012
114	2	0.00496
330	2	0.0231
565	2	0.0282
11400	2	0.0345
18000	2	0.0345
11	1	0.000771
22	1	0.000594
54	1	0.00112
124	1	0.00359
1080	1	0.0161
5710	1	0.0169
12700	1	0.0175
19600	1	0.0172
25000	1	0.0174
29600	1	0.0174
38000	1	0.0174
58600	1	0.0174

CL287 ----> CL4

No. of shared pairs: :19