Cluster no. 286

Go back to cluster table

Cluster is part of supercluster: 183

Cluster characteristics:

size 224
size_real 224
ecount 988
supercluster 183
annotations_summary
pair_completeness 0.454545454545455
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00446428571428571
satellite_probability 4.28848727092841e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 0
S5 2
S4 1
S7 1
S9 0
S6 2
S2 71
S1 78
S3 69
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0 0.0 0.0 0.0 0 0.0 0.0 0.0 0.0
S5 0 1.0 0.0 0.0 0 0.0 4.0 5.5 6.0
S4 0 0.0 0.0 0.0 0 0.0 0.5 0.0 0.5
S7 0 0.0 0.0 0.0 0 0.0 0.5 0.5 1.5
S9 0 0.0 0.0 0.0 0 0.0 0.0 0.0 0.0
S6 0 0.0 0.0 0.0 0 0.0 4.0 6.0 2.5
S2 0 4.0 0.5 0.5 0 4.0 96.0 104.0 100.0
S1 0 5.5 0.0 0.5 0 6.0 104.0 124.0 99.5
S3 0 6.0 0.5 1.5 0 2.5 100.0 99.5 96.0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 NA NA NA NA NA NA NA NA NA
S5 NA 3.630 0.00 0.000 NA 0.000 0.774 0.970 1.170
S4 NA 0.000 0.00 0.000 NA 0.000 1.600 0.000 1.610
S7 NA 0.000 0.00 0.000 NA 0.000 0.638 0.582 1.930
S9 NA NA NA NA NA NA NA NA NA
S6 NA 0.000 0.00 0.000 NA 0.000 1.020 1.400 0.645
S2 NA 0.774 1.60 0.638 NA 1.020 0.990 0.978 1.050
S1 NA 0.970 0.00 0.582 NA 1.400 0.978 1.060 0.945
S3 NA 1.170 1.61 1.930 NA 0.645 1.050 0.945 1.010

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters connected through mates:

Cluster Number of shared
read pairs		 k
547 16 0.305
616 8 0.155
188 7 0.0422
2230 4 0.0879
113 1 0.00236
125 1 0.00189
143 1 0.00217
168 1 0.00288
200 1 0.00619
393 1 0.0147
1930 1 0.0222
2180 1 0.0215
8380 1 0.0233
12600 1 0.023
16100 1 0.023
29500 1 0.0233
31200 1 0.0233
61700 1 0.0233

CL286 ----> CL547

image

No. of shared pairs: :16