Cluster no. 285

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Cluster is part of supercluster: 182

Cluster characteristics:

size 227
size_real 227
ecount 1063
supercluster 182
annotations_summary
pair_completeness 0.644927536231884
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0308370044052863
satellite_probability 6.75386114993017e-20
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 0
S5 89
S4 62
S7 0
S9 0
S6 76
S2 0
S1 0
S3 0
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0 0 0.0 0 0 0.0 0 0 0
S5 0 166 119.0 0 0 146.0 0 0 0
S4 0 119 66.0 0 0 92.5 0 0 0
S7 0 0 0.0 0 0 0.0 0 0 0
S9 0 0 0.0 0 0 0.0 0 0 0
S6 0 146 92.5 0 0 115.0 0 0 0
S2 0 0 0.0 0 0 0.0 0 0 0
S1 0 0 0.0 0 0 0.0 0 0 0
S3 0 0 0.0 0 0 0.0 0 0 0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 NA NA NA NA NA NA NA NA NA
S5 NA 0.948 1.060 NA NA 1.020 NA NA NA
S4 NA 1.060 0.911 NA NA 1.000 NA NA NA
S7 NA NA NA NA NA NA NA NA NA
S9 NA NA NA NA NA NA NA NA NA
S6 NA 1.020 1.000 NA NA 0.975 NA NA NA
S2 NA NA NA NA NA NA NA NA NA
S1 NA NA NA NA NA NA NA NA NA
S3 NA NA NA NA NA NA NA NA NA

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters connected through mates:

Cluster Number of shared
read pairs		 k
194 16 0.131
5160 4 0.145
25 1 0.00128
39 1 0.00102

CL285 ----> CL194

image

No. of shared pairs: :16