Cluster no. 284
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Cluster is part of supercluster: 181
Cluster characteristics:
| size |
227 |
| size_real |
227 |
| ecount |
1143 |
| supercluster |
181 |
| annotations_summary |
|
| pair_completeness |
0.576388888888889 |
| pbs_score |
None |
| TR_score |
None |
| TR_monomer_length |
None |
| loop_index |
0.00440528634361234 |
| satellite_probability |
1.00051650786948e-21 |
| consensus |
None |
| TAREAN_annotation |
Other |
| orientation_score |
1 |
comparative analysis:
Comparative analysis - species read counts:
| Species |
Read count |
| S8 |
5 |
| S5 |
0 |
| S4 |
0 |
| S7 |
5 |
| S9 |
7 |
| S6 |
0 |
| S2 |
61 |
| S1 |
69 |
| S3 |
80 |
comparative analysis - number of edges between species:
|
S8 |
S5 |
S4 |
S7 |
S9 |
S6 |
S2 |
S1 |
S3 |
| S8 |
2.0 |
0 |
0 |
2.5 |
3.5 |
0 |
2.5 |
1.0 |
1.5 |
| S5 |
0.0 |
0 |
0 |
0.0 |
0.0 |
0 |
0.0 |
0.0 |
0.0 |
| S4 |
0.0 |
0 |
0 |
0.0 |
0.0 |
0 |
0.0 |
0.0 |
0.0 |
| S7 |
2.5 |
0 |
0 |
3.0 |
4.0 |
0 |
0.5 |
0.0 |
0.0 |
| S9 |
3.5 |
0 |
0 |
4.0 |
7.0 |
0 |
1.5 |
1.5 |
0.5 |
| S6 |
0.0 |
0 |
0 |
0.0 |
0.0 |
0 |
0.0 |
0.0 |
0.0 |
| S2 |
2.5 |
0 |
0 |
0.5 |
1.5 |
0 |
89.0 |
96.5 |
124.0 |
| S1 |
1.0 |
0 |
0 |
0.0 |
1.5 |
0 |
96.5 |
107.0 |
138.0 |
| S3 |
1.5 |
0 |
0 |
0.0 |
0.5 |
0 |
124.0 |
138.0 |
179.0 |
comparative analysis - observed/expected number of edges between species
|
S8 |
S5 |
S4 |
S7 |
S9 |
S6 |
S2 |
S1 |
S3 |
| S8 |
13.500 |
NA |
NA |
22.000 |
17.1000 |
NA |
0.699 |
0.256 |
0.2970 |
| S5 |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
| S4 |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
| S7 |
22.000 |
NA |
NA |
34.300 |
25.4000 |
NA |
0.182 |
0.000 |
0.0000 |
| S9 |
17.100 |
NA |
NA |
25.400 |
24.7000 |
NA |
0.303 |
0.277 |
0.0716 |
| S6 |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
| S2 |
0.699 |
NA |
NA |
0.182 |
0.3030 |
NA |
1.030 |
1.020 |
1.0200 |
| S1 |
0.256 |
NA |
NA |
0.000 |
0.2770 |
NA |
1.020 |
1.030 |
1.0300 |
| S3 |
0.297 |
NA |
NA |
0.000 |
0.0716 |
NA |
1.020 |
1.030 |
1.0400 |
protein domains:
No protein domains detected
protein domains:
Reads annotation summary
No similarity hits to repeat databases found
clusters with similarity:
| Cluster |
Number of similarity hits |
|
|
|
clusters connected through mates:
| Cluster |
Number of shared
read pairs |
k |
|
| 23 |
20 |
0.0172 |
| 5 |
14 |
0.00741 |
| 1470 |
5 |
0.132 |
| 152 |
3 |
0.00763 |
| 196 |
1 |
0.00536 |
|
CL284 ----> CL23
No. of shared pairs: :20
CL284 ----> CL5
No. of shared pairs: :14