Cluster no. 283
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Cluster is part of supercluster: 180
Cluster characteristics:
| size |
228 |
| size_real |
228 |
| ecount |
980 |
| supercluster |
180 |
| annotations_summary |
|
| pair_completeness |
0.433962264150943 |
| pbs_score |
None |
| TR_score |
None |
| TR_monomer_length |
None |
| loop_index |
0.0043859649122807 |
| satellite_probability |
5.12148319141113e-21 |
| consensus |
None |
| TAREAN_annotation |
Other |
| orientation_score |
1 |
comparative analysis:
Comparative analysis - species read counts:
| Species |
Read count |
| S8 |
0 |
| S5 |
0 |
| S4 |
1 |
| S7 |
0 |
| S9 |
0 |
| S6 |
0 |
| S2 |
81 |
| S1 |
85 |
| S3 |
61 |
comparative analysis - number of edges between species:
|
S8 |
S5 |
S4 |
S7 |
S9 |
S6 |
S2 |
S1 |
S3 |
| S8 |
0 |
0 |
0.0 |
0 |
0 |
0 |
0.0 |
0 |
0.0 |
| S5 |
0 |
0 |
0.0 |
0 |
0 |
0 |
0.0 |
0 |
0.0 |
| S4 |
0 |
0 |
0.0 |
0 |
0 |
0 |
0.5 |
0 |
0.5 |
| S7 |
0 |
0 |
0.0 |
0 |
0 |
0 |
0.0 |
0 |
0.0 |
| S9 |
0 |
0 |
0.0 |
0 |
0 |
0 |
0.0 |
0 |
0.0 |
| S6 |
0 |
0 |
0.0 |
0 |
0 |
0 |
0.0 |
0 |
0.0 |
| S2 |
0 |
0 |
0.5 |
0 |
0 |
0 |
130.0 |
132 |
88.0 |
| S1 |
0 |
0 |
0.0 |
0 |
0 |
0 |
132.0 |
124 |
96.0 |
| S3 |
0 |
0 |
0.5 |
0 |
0 |
0 |
88.0 |
96 |
91.0 |
comparative analysis - observed/expected number of edges between species
|
S8 |
S5 |
S4 |
S7 |
S9 |
S6 |
S2 |
S1 |
S3 |
| S8 |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
| S5 |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
| S4 |
NA |
NA |
0.00 |
NA |
NA |
NA |
1.400 |
0.000 |
1.780 |
| S7 |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
| S9 |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
| S6 |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
| S2 |
NA |
NA |
1.40 |
NA |
NA |
NA |
1.030 |
1.050 |
0.892 |
| S1 |
NA |
NA |
0.00 |
NA |
NA |
NA |
1.050 |
0.978 |
0.969 |
| S3 |
NA |
NA |
1.78 |
NA |
NA |
NA |
0.892 |
0.969 |
1.170 |
protein domains:
No protein domains detected
protein domains:
Reads annotation summary
No similarity hits to repeat databases found
clusters with similarity:
| Cluster |
Number of similarity hits |
|
|
|
clusters connected through mates:
| Cluster |
Number of shared
read pairs |
k |
|
| 7 |
39 |
0.0263 |
| 30 |
26 |
0.0247 |
| 8990 |
1 |
0.0213 |
| 40200 |
1 |
0.0217 |
|
CL283 ----> CL7
No. of shared pairs: :39
CL283 ----> CL30
No. of shared pairs: :26