Cluster no. 282
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Cluster is part of supercluster: 179
Cluster characteristics:
| size |
231 |
| size_real |
231 |
| ecount |
984 |
| supercluster |
179 |
| annotations_summary |
|
| pair_completeness |
0.661870503597122 |
| pbs_score |
None |
| TR_score |
None |
| TR_monomer_length |
None |
| loop_index |
0.00432900432900433 |
| satellite_probability |
3.15659983381055e-22 |
| consensus |
None |
| TAREAN_annotation |
Other |
| orientation_score |
1 |
comparative analysis:
Comparative analysis - species read counts:
| Species |
Read count |
| S8 |
0 |
| S5 |
78 |
| S4 |
70 |
| S7 |
0 |
| S9 |
0 |
| S6 |
83 |
| S2 |
0 |
| S1 |
0 |
| S3 |
0 |
comparative analysis - number of edges between species:
|
S8 |
S5 |
S4 |
S7 |
S9 |
S6 |
S2 |
S1 |
S3 |
| S8 |
0 |
0.0 |
0.0 |
0 |
0 |
0 |
0 |
0 |
0 |
| S5 |
0 |
108.0 |
99.5 |
0 |
0 |
118 |
0 |
0 |
0 |
| S4 |
0 |
99.5 |
80.0 |
0 |
0 |
116 |
0 |
0 |
0 |
| S7 |
0 |
0.0 |
0.0 |
0 |
0 |
0 |
0 |
0 |
0 |
| S9 |
0 |
0.0 |
0.0 |
0 |
0 |
0 |
0 |
0 |
0 |
| S6 |
0 |
118.0 |
116.0 |
0 |
0 |
129 |
0 |
0 |
0 |
| S2 |
0 |
0.0 |
0.0 |
0 |
0 |
0 |
0 |
0 |
0 |
| S1 |
0 |
0.0 |
0.0 |
0 |
0 |
0 |
0 |
0 |
0 |
| S3 |
0 |
0.0 |
0.0 |
0 |
0 |
0 |
0 |
0 |
0 |
comparative analysis - observed/expected number of edges between species
|
S8 |
S5 |
S4 |
S7 |
S9 |
S6 |
S2 |
S1 |
S3 |
| S8 |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
| S5 |
NA |
1.01 |
1.020 |
NA |
NA |
0.980 |
NA |
NA |
NA |
| S4 |
NA |
1.02 |
0.898 |
NA |
NA |
1.070 |
NA |
NA |
NA |
| S7 |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
| S9 |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
| S6 |
NA |
0.98 |
1.070 |
NA |
NA |
0.963 |
NA |
NA |
NA |
| S2 |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
| S1 |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
| S3 |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
protein domains:
No protein domains detected
protein domains:
Reads annotation summary
No similarity hits to repeat databases found
clusters with similarity:
| Cluster |
Number of similarity hits |
|
|
|
clusters connected through mates:
| Cluster |
Number of shared
read pairs |
k |
|
| 135 |
17 |
0.0692 |
| 74 |
8 |
0.0229 |
| 2870 |
7 |
0.25 |
| 11000 |
2 |
0.0816 |
| 156 |
1 |
0.0161 |
| 4380 |
1 |
0.0377 |
| 6410 |
1 |
0.0385 |
| 18900 |
1 |
0.04 |
| 29000 |
1 |
0.0408 |
|
CL282 ----> CL135
No. of shared pairs: :17