Cluster no. 281

Go back to cluster table

Cluster is part of supercluster: 178

Cluster characteristics:

size 232
size_real 232
ecount 663
supercluster 178
annotations_summary
pair_completeness 0.254054054054054
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00431034482758621
satellite_probability 1.43823371129479e-20
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 0
S5 77
S4 63
S7 0
S9 2
S6 90
S2 0
S1 0
S3 0
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0 0.0 0.0 0 0.0 0.0 0 0 0
S5 0 74.0 71.5 0 2.5 76.0 0 0 0
S4 0 71.5 71.0 0 3.0 69.0 0 0 0
S7 0 0.0 0.0 0 0.0 0.0 0 0 0
S9 0 2.5 3.0 0 0.0 0.5 0 0 0
S6 0 76.0 69.0 0 0.5 73.0 0 0 0
S2 0 0.0 0.0 0 0.0 0.0 0 0 0
S1 0 0.0 0.0 0 0.0 0.0 0 0 0
S3 0 0.0 0.0 0 0.0 0.0 0 0 0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 NA NA NA NA NA NA NA NA NA
S5 NA 0.978 0.987 NA 1.230 1.030 NA NA NA
S4 NA 0.987 1.020 NA 1.550 0.976 NA NA NA
S7 NA NA NA NA NA NA NA NA NA
S9 NA 1.230 1.550 NA 0.000 0.253 NA NA NA
S6 NA 1.030 0.976 NA 0.253 1.010 NA NA NA
S2 NA NA NA NA NA NA NA NA NA
S1 NA NA NA NA NA NA NA NA NA
S3 NA NA NA NA NA NA NA NA NA

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters connected through mates:

Cluster Number of shared
read pairs		 k
307 14 0.124
276 11 0.0957
128 9 0.013
3070 4 0.0548
4460 3 0.0417
9600 3 0.0423
10500 3 0.0423
6230 2 0.028
10500 2 0.0282
15400 2 0.0284
61300 2 0.0286
34 1 0.000803
181 1 0.00227
8770 1 0.0141
9400 1 0.0143
11900 1 0.0142
14600 1 0.0142
23000 1 0.0143
24800 1 0.0143
28300 1 0.0143
34300 1 0.0143
52200 1 0.0143
53800 1 0.0143
56900 1 0.0143
58100 1 0.0143
60600 1 0.0143
62300 1 0.0143
70800 1 0.0143
71000 1 0.0143

CL281 ----> CL307

image

No. of shared pairs: :14

CL281 ----> CL276

image

No. of shared pairs: :11