Cluster no. 280

Go back to cluster table

Cluster is part of supercluster: 111

Cluster characteristics:

size 235
size_real 235
ecount 1046
supercluster 111
annotations_summary 0.43% organelle/plastid
pair_completeness 0.27027027027027
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00425531914893617
satellite_probability 1.3492571833667e-20
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 88
S5 0
S4 0
S7 65
S9 82
S6 0
S2 0
S1 0
S3 0
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 144 0 0 110 144 0 0 0 0
S5 0 0 0 0 0 0 0 0 0
S4 0 0 0 0 0 0 0 0 0
S7 110 0 0 71 100 0 0 0 0
S9 144 0 0 100 125 0 0 0 0
S6 0 0 0 0 0 0 0 0 0
S2 0 0 0 0 0 0 0 0 0
S1 0 0 0 0 0 0 0 0 0
S3 0 0 0 0 0 0 0 0 0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0.956 NA NA 1.030 1.030 NA NA NA NA
S5 NA NA NA NA NA NA NA NA NA
S4 NA NA NA NA NA NA NA NA NA
S7 1.030 NA NA 0.944 1.010 NA NA NA NA
S9 1.030 NA NA 1.010 0.963 NA NA NA NA
S6 NA NA NA NA NA NA NA NA NA
S2 NA NA NA NA NA NA NA NA NA
S1 NA NA NA NA NA NA NA NA NA
S3 NA NA NA NA NA NA NA NA NA

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 1 0.0043

clusters connected through mates:

Cluster Number of shared
read pairs		 k
232 23 0.12
4690 2 0.0288
16600 2 0.029
45600 2 0.0292
4 1 0.000601
11 1 0.000764
54 1 0.00111
192 1 0.00412
199 1 0.00621
235 1 0.00664
2670 1 0.0139
3620 1 0.0141
49500 1 0.0146
52700 1 0.0146

CL280 ----> CL232

image

No. of shared pairs: :23