Cluster no. 279

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Cluster is part of supercluster: 177

Cluster characteristics:

size 241
size_real 241
ecount 1663
supercluster 177
annotations_summary
pair_completeness 0.409356725146199
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.004149377593361
satellite_probability 6.04066957660451e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 0
S5 69
S4 81
S7 1
S9 0
S6 87
S2 3
S1 0
S3 0
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0 0 0 0.0 0 0.0 0 0 0
S5 0 137 151 1.0 0 185.0 4 0 0
S4 0 151 192 0.0 0 208.0 3 0 0
S7 0 1 0 0.0 0 0.5 0 0 0
S9 0 0 0 0.0 0 0.0 0 0 0
S6 0 185 208 0.5 0 221.0 4 0 0
S2 0 4 3 0.0 0 4.0 0 0 0
S1 0 0 0 0.0 0 0.0 0 0 0
S3 0 0 0 0.0 0 0.0 0 0 0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 NA NA NA NA NA NA NA NA NA
S5 NA 0.997 0.948 2.320 NA 1.040 1.270 NA NA
S4 NA 0.948 1.040 0.000 NA 1.010 0.819 NA NA
S7 NA 2.320 0.000 0.000 NA 0.896 0.000 NA NA
S9 NA NA NA NA NA NA NA NA NA
S6 NA 1.040 1.010 0.896 NA 0.961 0.978 NA NA
S2 NA 1.270 0.819 0.000 NA 0.978 0.000 NA NA
S1 NA NA NA NA NA NA NA NA NA
S3 NA NA NA NA NA NA NA NA NA

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters connected through mates:

Cluster Number of shared
read pairs
k
1170 9 0.155
587 8 0.129
37 3 0.00378
18700 2 0.0385
6 1 0.000371
10 1 0.000613
47 1 0.000999
62 1 0.00213
1080 1 0.0167
2160 1 0.0182
3960 1 0.0189
8640 1 0.019
19500 1 0.0192
20600 1 0.0194
20800 1 0.0194
40100 1 0.0194
40800 1 0.0194
52200 1 0.0194
56700 1 0.0194
69300 1 0.0194