Cluster no. 278

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Cluster is part of supercluster: 176

Cluster characteristics:

size 242
size_real 242
ecount 2054
supercluster 176
annotations_summary
pair_completeness 0.406976744186046
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.181818181818182
satellite_probability 8.63364434527012e-13
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 0
S5 67
S4 95
S7 1
S9 1
S6 78
S2 0
S1 0
S3 0
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0 0.0 0.0 0.0 0 0 0 0 0
S5 0 129.0 187.0 2.5 0 160 0 0 0
S4 0 187.0 352.0 4.5 0 303 0 0 0
S7 0 2.5 4.5 0.0 0 4 0 0 0
S9 0 0.0 0.0 0.0 0 1 0 0 0
S6 0 160.0 303.0 4.0 1 250 0 0 0
S2 0 0.0 0.0 0.0 0 0 0 0 0
S1 0 0.0 0.0 0.0 0 0 0 0 0
S3 0 0.0 0.0 0.0 0 0 0 0 0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 NA NA NA NA NA NA NA NA NA
S5 NA 1.160 0.949 0.977 0.00 0.955 NA NA NA
S4 NA 0.949 1.010 0.993 0.00 1.020 NA NA NA
S7 NA 0.977 0.993 0.000 0.00 1.040 NA NA NA
S9 NA 0.000 0.000 0.000 0.00 2.860 NA NA NA
S6 NA 0.955 1.020 1.040 2.86 0.997 NA NA NA
S2 NA NA NA NA NA NA NA NA NA
S1 NA NA NA NA NA NA NA NA NA
S3 NA NA NA NA NA NA NA NA NA

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters connected through mates:

Cluster Number of shared
read pairs		 k
1730 5 0.0917
9570 2 0.0377
46200 2 0.0385
67100 2 0.0385
3 1 0.000348
14 1 0.000603
19 1 0.000568
31 1 0.00125
45 1 0.000675
48 1 0.000976
56 1 0.00149
66 1 0.00119
81 1 0.00238
88 1 0.00142
92 1 0.00198
99 1 0.00175
105 1 0.00174
117 1 0.00238
130 1 0.00219
179 1 0.00314
358 1 0.0154
4330 1 0.0187
5000 1 0.0185
13400 1 0.019
16300 1 0.019
16800 1 0.019
20000 1 0.0192
27800 1 0.0192
31000 1 0.0192
44800 1 0.0192
45700 1 0.0192
61200 1 0.0192
63600 1 0.0192