Cluster no. 277

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Cluster is part of supercluster: 175

Cluster characteristics:

size 247
size_real 247
ecount 1696
supercluster 175
annotations_summary
pair_completeness 0.583333333333333
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00404858299595142
satellite_probability 1.00051650786948e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 82
S5 0
S4 0
S7 86
S9 74
S6 1
S2 2
S1 0
S3 2
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 194.0 0 0 218.0 162.0 0.0 1.5 0 11.5
S5 0.0 0 0 0.0 0.0 0.0 0.0 0 0.0
S4 0.0 0 0 0.0 0.0 0.0 0.0 0 0.0
S7 218.0 0 0 212.0 172.0 0.5 3.5 0 11.0
S9 162.0 0 0 172.0 113.0 0.0 2.0 0 6.5
S6 0.0 0 0 0.5 0.0 0.0 0.0 0 0.0
S2 1.5 0 0 3.5 2.0 0.0 0.0 0 0.0
S1 0.0 0 0 0.0 0.0 0.0 0.0 0 0.0
S3 11.5 0 0 11.0 6.5 0.0 0.0 0 1.0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0.957 NA NA 1.020 1.030 0.00 0.62 NA 1.110
S5 NA NA NA NA NA NA NA NA NA
S4 NA NA NA NA NA NA NA NA NA
S7 1.020 NA NA 0.944 1.040 2.75 1.37 NA 1.010
S9 1.030 NA NA 1.040 0.926 0.00 1.06 NA 0.808
S6 0.000 NA NA 2.750 0.000 0.00 0.00 NA 0.000
S2 0.620 NA NA 1.370 1.060 0.00 0.00 NA 0.000
S1 NA NA NA NA NA NA NA NA NA
S3 1.110 NA NA 1.010 0.808 0.00 0.00 NA 1.880

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters connected through mates:

Cluster Number of shared
read pairs		 k
100 17 0.0369
9 1 0.00137
11 1 0.000785
12 1 0.000817
17 1 0.000607
21 1 0.00196
22 1 0.000602
53 1 0.0017
59 1 0.000829
83 1 0.00245
139 1 0.00341
1290 1 0.0256
2120 1 0.0278
7370 1 0.0294
31000 1 0.0299
35800 1 0.0299

CL277 ----> CL100

image

No. of shared pairs: :17