Cluster no. 276

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Cluster is part of supercluster: 174

Cluster characteristics:

size 250
size_real 250
ecount 588
supercluster 174
annotations_summary
pair_completeness 0.461988304093567
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.004
satellite_probability 3.90603663686178e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 2
S5 76
S4 73
S7 0
S9 0
S6 99
S2 0
S1 0
S3 0
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0 0 0 0 0 2 0 0 0
S5 0 66 61 0 0 67 0 0 0
S4 0 61 48 0 0 63 0 0 0
S7 0 0 0 0 0 0 0 0 0
S9 0 0 0 0 0 0 0 0 0
S6 2 67 63 0 0 88 0 0 0
S2 0 0 0 0 0 0 0 0 0
S1 0 0 0 0 0 0 0 0 0
S3 0 0 0 0 0 0 0 0 0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0.00 0.000 0.000 NA NA 2.670 NA NA NA
S5 0.00 1.030 1.070 NA NA 0.923 NA NA NA
S4 0.00 1.070 0.954 NA NA 0.979 NA NA NA
S7 NA NA NA NA NA NA NA NA NA
S9 NA NA NA NA NA NA NA NA NA
S6 2.67 0.923 0.979 NA NA 1.070 NA NA NA
S2 NA NA NA NA NA NA NA NA NA
S1 NA NA NA NA NA NA NA NA NA
S3 NA NA NA NA NA NA NA NA NA

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters connected through mates:

Cluster Number of shared
read pairs		 k
281 11 0.0957
507 3 0.0536
2940 3 0.0606
5410 3 0.0625
8250 3 0.0625
2670 2 0.0404
3020 2 0.04
3280 2 0.0408
3970 2 0.0404
15500 2 0.0421
60500 2 0.0426
126 1 0.00219
2380 1 0.0204
5040 1 0.0208
6620 1 0.0215
10000 1 0.0208
15400 1 0.0211
20600 1 0.0213
36900 1 0.0213

CL276 ----> CL281

image

No. of shared pairs: :11