Cluster no. 275

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Cluster is part of supercluster: 173

Cluster characteristics:

size 251
size_real 251
ecount 959
supercluster 173
annotations_summary 3.59% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-GAG
pair_completeness 0.321052631578947
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00398406374501992
satellite_probability 1.08737944923628e-20
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 0
S5 2
S4 0
S7 0
S9 0
S6 0
S2 84
S1 88
S3 77
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0 0 0 0 0 0 0 0 0
S5 0 0 0 0 0 0 3 2 2
S4 0 0 0 0 0 0 0 0 0
S7 0 0 0 0 0 0 0 0 0
S9 0 0 0 0 0 0 0 0 0
S6 0 0 0 0 0 0 0 0 0
S2 0 3 0 0 0 0 100 111 102
S1 0 2 0 0 0 0 111 111 108
S3 0 2 0 0 0 0 102 108 91
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 NA NA NA NA NA NA NA NA NA
S5 NA 0.000 NA NA NA NA 1.300 0.825 0.903
S4 NA NA NA NA NA NA NA NA NA
S7 NA NA NA NA NA NA NA NA NA
S9 NA NA NA NA NA NA NA NA NA
S6 NA NA NA NA NA NA NA NA NA
S2 NA 1.300 NA NA NA NA 0.957 1.010 1.020
S1 NA 0.825 NA NA NA NA 1.010 0.966 1.030
S3 NA 0.903 NA NA NA NA 1.020 1.030 0.947

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Tekay Ty3-GAG Tekay Ty3-GAG 9 0.036

clusters with similarity:

Cluster Number of similarity hits
46 2

clusters connected through mates:

Cluster Number of shared
read pairs		 k
46 26 0.0267
1480 4 0.058
4220 3 0.0441
42 2 0.0031
210 2 0.00733
2750 2 0.0294
8200 2 0.0301
44400 2 0.0305
7 1 0.000666
27 1 0.00107
50 1 0.00365
57 1 0.00116
98 1 0.00209
113 1 0.00224
143 1 0.00207
182 1 0.00422
290 1 0.0103
1240 1 0.014
1590 1 0.0144
2460 1 0.0144
5130 1 0.015
13700 1 0.0152
15700 1 0.0152
22100 1 0.0153
24400 1 0.0153

CL275 ----> CL46

image

No. of shared pairs: :26