Cluster no. 274

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Cluster is part of supercluster: 172

Cluster characteristics:

size 268
size_real 268
ecount 2306
supercluster 172
annotations_summary 35.45% 5S_rDNA/5S_rDNA
pair_completeness 0.74025974025974
pbs_score 0.0
TR_score 0.37414947322212466
TR_monomer_length 557.0
loop_index 0.720149253731343
satellite_probability 0.0170996319669902
consensus 
TTAACCGCGGCATTTATCTACGCTCTACAGCCACTGCATTAGTGCTTGGCCAATCCACTTCCTGACGGGTGCGATCATAC
CAGCACTAAAGCACCGGATCCCATCAGAACTCCGAAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTC
CTGGGAAGTCCTCGTGTTGCACCCCCTCCCTTTTTGTCAACCACCGCCGCAGTTCGAACTTACAGTTTAAAATTTCAACA
TTTTTTATTTATTTCTACTTCTTTATTAGAACTTGAACACTTTTTTTATTTTCTTTACAATTTCATTTCCTTTTATTTTC
AAATTTAACGTTCTCACTACGTTGTCTGGTTGAATTTCAAAAGCTGACAGTAGTTTCTTTCCTTCAATTCTTTCCGTATG
CCATTCTCACCGTCGTTGTTTGAATTTGTGGATTCAAATACTTCATTTCGTTCTTGATTCTTTTTAATTGCAAATTTAGC
TTTCTCCCTTATTTCTATTTTTATTTTTATTTTGTCAAATGTAATGTTATTTCTAAGAATTTCAAACGTTGTTGCCG

  

  

    TAREAN_annotation
    rDNA
  

  

    orientation_score
    1
  

 


 
 comparative analysis:


  





 
 Comparative analysis - species read counts:



  

    Species
    Read count
  

   

    S8
    73
  

  

    S5
     3
  

  

    S4
     5
  

  

    S7
    74
  

  

    S9
    61
  

  

    S6
    10
  

  

    S2
    17
  

  

    S1
    12
  

  

    S3
    13
  

 


 
 comparative analysis - number of edges between species:



  

    
    S8
    S5
    S4
    S7
    S9
    S6
    S2
    S1
    S3
  

   

    S8
    188.0
    10.0
    2.0
    206.0
    176.0
    29.5
    13.0
    23.5
     5.5
  

  

    S5
     10.0
     1.0
    1.5
      9.5
      5.5
     6.5
     2.5
     5.5
     1.0
  

  

    S4
      2.0
     1.5
    4.0
      0.5
      1.0
     7.5
     1.5
     1.5
     0.5
  

  

    S7
    206.0
     9.5
    0.5
    205.0
    173.0
    25.5
    13.5
    13.5
     5.5
  

  

    S9
    176.0
     5.5
    1.0
    173.0
    128.0
    15.0
     8.0
     9.5
     4.0
  

  

    S6
     29.5
     6.5
    7.5
     25.5
     15.0
    23.0
    11.0
    18.0
     4.0
  

  

    S2
     13.0
     2.5
    1.5
     13.5
      8.0
    11.0
    23.0
    22.0
    13.5
  

  

    S1
     23.5
     5.5
    1.5
     13.5
      9.5
    18.0
    22.0
    17.0
     7.5
  

  

    S3
      5.5
     1.0
    0.5
      5.5
      4.0
     4.0
    13.5
     7.5
    10.0
  

 


 
 comparative analysis - observed/expected number of edges between species



  

    
    S8
    S5
    S4
    S7
    S9
    S6
    S2
    S1
    S3
  

   

    S8
    1.020
    0.821
     0.3530
    1.1100
    1.200
    0.744
    0.425
    0.703
    0.377
  

  

    S5
    0.821
    1.250
     4.0200
    0.7820
    0.567
    2.490
    1.240
    2.500
    1.040
  

  

    S4
    0.353
    4.020
    23.1000
    0.0885
    0.222
    6.180
    1.600
    1.470
    1.120
  

  

    S7
    1.110
    0.782
     0.0885
    1.1100
    1.180
    0.645
    0.442
    0.405
    0.378
  

  

    S9
    1.200
    0.567
     0.2220
    1.1800
    1.090
    0.475
    0.328
    0.357
    0.344
  

  

    S6
    0.744
    2.490
     6.1800
    0.6450
    0.475
    2.710
    1.680
    2.510
    1.280
  

  

    S2
    0.425
    1.240
     1.6000
    0.4420
    0.328
    1.680
    4.550
    3.980
    5.600
  

  

    S1
    0.703
    2.500
     1.4700
    0.4050
    0.357
    2.510
    3.980
    2.820
    2.850
  

  

    S3
    0.377
    1.040
     1.1200
    0.3780
    0.344
    1.280
    5.600
    2.850
    8.690
  

 


 
 protein domains:



protein domains:


  





 
 Reads annotation summary










	

	 
	
 
		   
		cl_string  
		domain  
		Freq  
		proportion 
	
 

 
5S_rDNA 

5S_rDNA



95

0.35


 
	


 

 


 
 clusters connected through mates:



  

    
      




 

    Cluster
    Number of shared
 read pairs		
    k
  

      

   		
 

 

   
     

       




  

    6200
    3
    0.14
  

  

    4500
    2
    0.0909
  

  

    6480
    2
    0.093
  

  

    9850
    2
    0.0952
  

  

    60600
    2
    0.0952
  

  

    39
    1
    0.00102
  

  

    131
    1
    0.00278
  

  

    4810
    1
    0.0476
  

  

    5700
    1
    0.0465
  

  

    32600
    1
    0.0476