Cluster no. 273

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Cluster is part of supercluster: 171

Cluster characteristics:

size 269
size_real 269
ecount 639
supercluster 171
annotations_summary 67.29% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-INT
1.49% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-aRH
pair_completeness 0.502793296089385
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00371747211895911
satellite_probability 2.60623974767306e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 0
S5 0
S4 0
S7 0
S9 0
S6 0
S2 92
S1 84
S3 93
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0 0 0 0 0 0 0 0.0 0.0
S5 0 0 0 0 0 0 0 0.0 0.0
S4 0 0 0 0 0 0 0 0.0 0.0
S7 0 0 0 0 0 0 0 0.0 0.0
S9 0 0 0 0 0 0 0 0.0 0.0
S6 0 0 0 0 0 0 0 0.0 0.0
S2 0 0 0 0 0 0 77 69.0 69.0
S1 0 0 0 0 0 0 69 63.0 73.5
S3 0 0 0 0 0 0 69 73.5 76.0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 NA NA NA NA NA NA NA NA NA
S5 NA NA NA NA NA NA NA NA NA
S4 NA NA NA NA NA NA NA NA NA
S7 NA NA NA NA NA NA NA NA NA
S9 NA NA NA NA NA NA NA NA NA
S6 NA NA NA NA NA NA NA NA NA
S2 NA NA NA NA NA NA 1.060 0.998 0.939
S1 NA NA NA NA NA NA 0.998 0.953 1.050
S3 NA NA NA NA NA NA 0.939 1.050 1.020

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
TatV Ty3-INT TatV Ty3-INT 181 0.673
TatV Ty3-aRH TatV Ty3-aRH 4 0.015

clusters connected through mates:

Cluster Number of shared
read pairs		 k
269 12 0.133
763 6 0.11
13000 3 0.0652
2280 2 0.0408
11700 2 0.0435
19800 2 0.0435
65900 2 0.044
174 1 0.00412
447 1 0.0149
8960 1 0.0215
10100 1 0.0215
14400 1 0.0217
23400 1 0.022
26600 1 0.022
63300 1 0.022

CL273 ----> CL269

image

No. of shared pairs: :12