Cluster no. 272

Cluster no. 272

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Cluster is part of supercluster: 170

Cluster characteristics:

size	272
size_real	272
ecount	1031
supercluster	170
annotations_summary	24.63% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-GAG 1.10% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-GAG
pair_completeness	0.431578947368421
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00367647058823529
satellite_probability	5.12148319141113e-21
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	0
S5	80
S4	116
S7	0
S9	0
S6	76
S2	0
S1	0
S3	0

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	0	0.0	0	0	0	0.0	0	0	0
S5	0	101.0	142	0	0	84.5	0	0	0
S4	0	142.0	209	0	0	124.0	0	0	0
S7	0	0.0	0	0	0	0.0	0	0	0
S9	0	0.0	0	0	0	0.0	0	0	0
S6	0	84.5	124	0	0	80.0	0	0	0
S2	0	0.0	0	0	0	0.0	0	0	0
S1	0	0.0	0	0	0	0.0	0	0	0
S3	0	0.0	0	0	0	0.0	0	0	0

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	NA	NA	NA	NA	NA	NA	NA	NA	NA
S5	NA	1.030	0.998	NA	NA	0.974	NA	NA	NA
S4	NA	0.998	1.010	NA	NA	0.989	NA	NA	NA
S7	NA	NA	NA	NA	NA	NA	NA	NA	NA
S9	NA	NA	NA	NA	NA	NA	NA	NA	NA
S6	NA	0.974	0.989	NA	NA	1.050	NA	NA	NA
S2	NA	NA	NA	NA	NA	NA	NA	NA	NA
S1	NA	NA	NA	NA	NA	NA	NA	NA	NA
S3	NA	NA	NA	NA	NA	NA	NA	NA	NA

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

CRM Ty3-GAG CRM Ty3-GAG 3 0.011

Tekay Ty3-GAG Tekay Ty3-GAG 67 0.246

clusters with similarity:

Cluster	Number of similarity hits

1	16
87	2

clusters connected through mates:

Cluster	Number of shared read pairs	k

1	35	0.0197
258	14	0.135
87	6	0.00888
5160	3	0.0526
19100	2	0.036
60000	2	0.0364
6770	1	0.018
7260	1	0.0177
23200	1	0.0182
32100	1	0.0182
43300	1	0.0182
56100	1	0.0182
70200	1	0.0182

CL272 ----> CL1

No. of shared pairs: :35

CL272 ----> CL258

No. of shared pairs: :14