Cluster no. 271

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Cluster is part of supercluster: 169

Cluster characteristics:

size 273
size_real 273
ecount 589
supercluster 169
annotations_summary
pair_completeness 0.30622009569378
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00366300366300366
satellite_probability 1.14260235015906e-20
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 0
S5 80
S4 98
S7 0
S9 0
S6 95
S2 0
S1 0
S3 0
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0 0.0 0.0 0 0 0.0 0 0 0
S5 0 67.0 67.5 0 0 55.5 0 0 0
S4 0 67.5 74.0 0 0 64.5 0 0 0
S7 0 0.0 0.0 0 0 0.0 0 0 0
S9 0 0.0 0.0 0 0 0.0 0 0 0
S6 0 55.5 64.5 0 0 73.0 0 0 0
S2 0 0.0 0.0 0 0 0.0 0 0 0
S1 0 0.0 0.0 0 0 0.0 0 0 0
S3 0 0.0 0.0 0 0 0.0 0 0 0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 NA NA NA NA NA NA NA NA NA
S5 NA 1.090 1.020 NA NA 0.891 NA NA NA
S4 NA 1.020 1.030 NA NA 0.956 NA NA NA
S7 NA NA NA NA NA NA NA NA NA
S9 NA NA NA NA NA NA NA NA NA
S6 NA 0.891 0.956 NA NA 1.150 NA NA NA
S2 NA NA NA NA NA NA NA NA NA
S1 NA NA NA NA NA NA NA NA NA
S3 NA NA NA NA NA NA NA NA NA

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters connected through mates:

Cluster Number of shared
read pairs		 k
900 9 0.108
2920 3 0.04
9190 3 0.0403
3 2 0.000691
323 2 0.0154
3570 2 0.027
7150 2 0.0267
27100 2 0.0272
38400 2 0.0272
43700 2 0.0272
29 1 9e-04
44 1 0.00108
6610 1 0.0133
6760 1 0.0133
7160 1 0.0135
10900 1 0.0134
11700 1 0.0135
15500 1 0.0137
17500 1 0.0135
27000 1 0.0136
64600 1 0.0136
68200 1 0.0136