Cluster no. 270

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Cluster is part of supercluster: 168

Cluster characteristics:

size 281
size_real 281
ecount 703
supercluster 168
annotations_summary
pair_completeness 0.38423645320197
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00355871886120996
satellite_probability 7.55887620545779e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 96
S5 0
S4 0
S7 82
S9 102
S6 0
S2 1
S1 0
S3 0
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 94.0 0 0 67.0 94.5 0 0.0 0 0
S5 0.0 0 0 0.0 0.0 0 0.0 0 0
S4 0.0 0 0 0.0 0.0 0 0.0 0 0
S7 67.0 0 0 57.0 71.0 0 0.5 0 0
S9 94.5 0 0 71.0 86.0 0 0.0 0 0
S6 0.0 0 0 0.0 0.0 0 0.0 0 0
S2 0.0 0 0 0.5 0.0 0 0.0 0 0
S1 0.0 0 0 0.0 0.0 0 0.0 0 0
S3 0.0 0 0 0.0 0.0 0 0.0 0 0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 1.010 NA NA 0.943 1.030 NA 0.0 NA NA
S5 NA NA NA NA NA NA NA NA NA
S4 NA NA NA NA NA NA NA NA NA
S7 0.943 NA NA 1.050 1.020 NA 3.6 NA NA
S9 1.030 NA NA 1.020 0.956 NA 0.0 NA NA
S6 NA NA NA NA NA NA NA NA NA
S2 0.000 NA NA 3.600 0.000 NA 0.0 NA NA
S1 NA NA NA NA NA NA NA NA NA
S3 NA NA NA NA NA NA NA NA NA

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters connected through mates:

Cluster Number of shared
read pairs		 k
483 12 0.15
1740 6 0.0909
17100 3 0.0469
22 2 0.00118
192 2 0.0084
4540 2 0.0305
5100 2 0.031
14500 2 0.0312
14600 2 0.0312
17100 2 0.0312
26200 2 0.0315
50600 2 0.0315
67400 2 0.0315
8 1 0.000532
21 1 0.00185
32 1 0.00153
54 1 0.00111
91 1 0.00139
265 1 0.00806
343 1 0.011
1640 1 0.015
2510 1 0.015
8280 1 0.0155
8470 1 0.0157
11000 1 0.0155
16400 1 0.0156
18200 1 0.0156
18400 1 0.0156
28300 1 0.0157
32100 1 0.0157
43400 1 0.0157
46900 1 0.0157
50200 1 0.0157
53300 1 0.0157
59200 1 0.0157

CL270 ----> CL483

image

No. of shared pairs: :12