Cluster no. 269

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Cluster is part of supercluster: 167

Cluster characteristics:

size 285
size_real 285
ecount 2557
supercluster 167
annotations_summary
pair_completeness 0.515957446808511
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.547368421052632
satellite_probability 0.00031577770242341
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 0
S5 2
S4 0
S7 2
S9 0
S6 0
S2 79
S1 100
S3 102
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0 0 0 0.0 0 0 0.0 0.0 0.0
S5 0 0 0 0.0 0 0 1.0 0.0 0.0
S4 0 0 0 0.0 0 0 0.0 0.0 0.0
S7 0 0 0 1.0 0 0 2.5 4.5 3.5
S9 0 0 0 0.0 0 0 0.0 0.0 0.0
S6 0 0 0 0.0 0 0 0.0 0.0 0.0
S2 0 1 0 2.5 0 0 164.0 234.0 206.0
S1 0 0 0 4.5 0 0 234.0 517.0 352.0
S3 0 0 0 3.5 0 0 206.0 352.0 267.0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 NA NA NA NA NA NA NA NA NA
S5 NA 0.00 NA 0.000 NA NA 4.210 0.000 0.000
S4 NA NA NA NA NA NA NA NA NA
S7 NA 0.00 NA 19.300 NA NA 0.915 0.903 0.938
S9 NA NA NA NA NA NA NA NA NA
S6 NA NA NA NA NA NA NA NA NA
S2 NA 4.21 NA 0.915 NA NA 1.140 0.887 1.050
S1 NA 0.00 NA 0.903 NA NA 0.887 1.080 0.981
S3 NA 0.00 NA 0.938 NA NA 1.050 0.981 0.992

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters connected through mates:

Cluster Number of shared
read pairs		 k
273 12 0.133
9670 3 0.0632
422 2 0.0336
5890 2 0.0426
18100 2 0.0426
174 1 0.0041
294 1 0.0131
3320 1 0.0206
4720 1 0.0211
8960 1 0.0211
9390 1 0.0211
11700 1 0.0213
21300 1 0.0215
23400 1 0.0215
33200 1 0.0215
59400 1 0.0215
69300 1 0.0215

CL269 ----> CL273

image

No. of shared pairs: :12