Cluster no. 268

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Cluster is part of supercluster: 166

Cluster characteristics:

size 286
size_real 286
ecount 813
supercluster 166
annotations_summary
pair_completeness 0.537634408602151
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0034965034965035
satellite_probability 1.65508917325132e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 2
S5 0
S4 0
S7 6
S9 5
S6 1
S2 92
S1 98
S3 82
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0.0 0 0 1.0 0.0 0.0 0.0 0.5 0
S5 0.0 0 0 0.0 0.0 0.0 0.0 0.0 0
S4 0.0 0 0 0.0 0.0 0.0 0.0 0.0 0
S7 1.0 0 0 2.0 1.5 0.0 0.5 2.0 1
S9 0.0 0 0 1.5 2.0 0.0 0.0 0.5 1
S6 0.0 0 0 0.0 0.0 0.0 1.0 2.5 1
S2 0.0 0 0 0.5 0.0 1.0 83.0 86.5 70
S1 0.5 0 0 2.0 0.5 2.5 86.5 109.0 100
S3 0.0 0 0 1.0 1.0 1.0 70.0 100.0 79
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0.0 NA NA 67.800 0.000 0.000 0.000 0.900 0.000
S5 NA NA NA NA NA NA NA NA NA
S4 NA NA NA NA NA NA NA NA NA
S7 67.8 NA NA 25.400 30.500 0.000 0.211 0.675 0.403
S9 0.0 NA NA 30.500 65.000 0.000 0.000 0.270 0.645
S6 0.0 NA NA 0.000 0.000 0.000 0.750 1.500 0.717
S2 0.0 NA NA 0.211 0.000 0.750 1.160 0.969 0.937
S1 0.9 NA NA 0.675 0.270 1.500 0.969 0.978 1.070
S3 0.0 NA NA 0.403 0.645 0.717 0.937 1.070 1.010

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters connected through mates:

Cluster Number of shared
read pairs		 k
113 10 0.0235
1520 5 0.099
5480 4 0.087
3120 3 0.0652
223 2 0.0142
33200 2 0.0455
91 1 0.00143
110 1 0.00148
210 1 0.00398
3510 1 0.0213
31100 1 0.0227

CL268 ----> CL113

image

No. of shared pairs: :10