Cluster no. 265

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Cluster is part of supercluster: 163

Cluster characteristics:

size 309
size_real 309
ecount 1868
supercluster 163
annotations_summary 0.32% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT
pair_completeness 0.430555555555556
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00323624595469256
satellite_probability 5.12148319141113e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 107
S5 0
S4 0
S7 129
S9 71
S6 0
S2 0
S1 0
S3 2
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 222.0 0 0 266.0 166 0 0 0 0.5
S5 0.0 0 0 0.0 0 0 0 0 0.0
S4 0.0 0 0 0.0 0 0 0 0 0.0
S7 266.0 0 0 343.0 164 0 0 0 1.5
S9 166.0 0 0 164.0 103 0 0 0 2.0
S6 0.0 0 0 0.0 0 0 0 0 0.0
S2 0.0 0 0 0.0 0 0 0 0 0.0
S1 0.0 0 0 0.0 0 0 0 0 0.0
S3 0.5 0 0 1.5 2 0 0 0 0.0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0.967 NA NA 0.981 1.090 NA NA NA 0.356
S5 NA NA NA NA NA NA NA NA NA
S4 NA NA NA NA NA NA NA NA NA
S7 0.981 NA NA 1.070 0.908 NA NA NA 0.904
S9 1.090 NA NA 0.908 1.020 NA NA NA 2.150
S6 NA NA NA NA NA NA NA NA NA
S2 NA NA NA NA NA NA NA NA NA
S1 NA NA NA NA NA NA NA NA NA
S3 0.356 NA NA 0.904 2.150 NA NA NA 0.000

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Reina Ty3-INT Reina Ty3-INT 1 0.0032

clusters connected through mates:

Cluster Number of shared
read pairs		 k
193 10 0.0826
172 4 0.0324
199 4 0.0258
1410 3 0.0438
7570 3 0.0472
9 2 0.00264
8490 2 0.0315
14900 2 0.0317
5 1 0.000521
11 1 0.000768
12 1 0.000798
22 1 0.000592
51 1 0.000788
68 1 0.00118
69 1 0.000844
106 1 0.00215
107 1 0.00158
140 1 0.00198
251 1 0.00662
261 1 0.00909
270 1 0.00806
330 1 0.0109
660 1 0.0144
2060 1 0.0148
5430 1 0.0157
9630 1 0.0157
9680 1 0.0157
10600 1 0.016
14900 1 0.0159
19000 1 0.0159
19000 1 0.0159
33500 1 0.016
47100 1 0.016
50000 1 0.016
52600 1 0.016
56600 1 0.016
63800 1 0.016

CL265 ----> CL193

image

No. of shared pairs: :10