Cluster no. 263

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Cluster is part of supercluster: 161

Cluster characteristics:

size 310
size_real 310
ecount 331
supercluster 161
annotations_summary 31.94% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-GAG
2.58% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-GAG
0.65% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-GAG
pair_completeness 0.313559322033898
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0032258064516129
satellite_probability 1.14260235015906e-20
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 110
S5 0
S4 3
S7 91
S9 106
S6 0
S2 0
S1 0
S3 0
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 93.0 0 2.5 53.5 60.0 0 0 0 0
S5 0.0 0 0.0 0.0 0.0 0 0 0 0
S4 2.5 0 0.0 1.0 2.5 0 0 0 0
S7 53.5 0 1.0 37.0 46.5 0 0 0 0
S9 60.0 0 2.5 46.5 54.0 0 0 0 0
S6 0.0 0 0.0 0.0 0.0 0 0 0 0
S2 0.0 0 0.0 0.0 0.0 0 0 0 0
S1 0.0 0 0.0 0.0 0.0 0 0 0 0
S3 0.0 0 0.0 0.0 0.0 0 0 0 0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 1.100 NA 1.030 0.957 0.909 NA NA NA NA
S5 NA NA NA NA NA NA NA NA NA
S4 1.030 NA 0.000 0.623 1.320 NA NA NA NA
S7 0.957 NA 0.623 1.000 1.070 NA NA NA NA
S9 0.909 NA 1.320 1.070 1.050 NA NA NA NA
S6 NA NA NA NA NA NA NA NA NA
S2 NA NA NA NA NA NA NA NA NA
S1 NA NA NA NA NA NA NA NA NA
S3 NA NA NA NA NA NA NA NA NA

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
CRM Ty3-GAG CRM Ty3-GAG 8 0.0258
Galadriel Ty3-GAG Galadriel Ty3-GAG 2 0.0065
Tekay Ty3-GAG Tekay Ty3-GAG 99 0.3194

clusters with similarity:

Cluster Number of similarity hits
32 3
12 2
9 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
32 25 0.0372
12 21 0.0165
9 13 0.0167
221 3 0.0158
3840 3 0.0359
3380 2 0.0235
5760 2 0.024
27300 2 0.0244
41600 2 0.0244
5 1 0.000515
22 1 0.000585
83 1 0.00219
91 1 0.00136
585 1 0.0108
1920 1 0.0115
2580 1 0.0116
3190 1 0.0118
5970 1 0.012
7470 1 0.0122
24500 1 0.0122
26000 1 0.0122
26700 1 0.0122
42500 1 0.0122
43000 1 0.0122
44800 1 0.0122

CL263 ----> CL32

image

No. of shared pairs: :25

CL263 ----> CL12

image

No. of shared pairs: :21

CL263 ----> CL9

image

No. of shared pairs: :13