Cluster no. 262

Cluster no. 262

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Cluster is part of supercluster: 160

Cluster characteristics:

size	318
size_real	318
ecount	1147
supercluster	160
annotations_summary	1.26% Class_I/LTR/Ty1_copia/Bianca:Ty1-RH
pair_completeness	0.566502463054187
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.160377358490566
satellite_probability	4.49499002753133e-14
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	30
S5	9
S4	22
S7	28
S9	39
S6	4
S2	68
S1	55
S3	63

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	17.0	0.0	0.0	17.5	25.5	0.0	2.5	2.5	3.0
S5	0.0	6.0	6.0	0.5	0.5	2.5	0.5	0.0	0.0
S4	0.0	6.0	44.0	1.5	7.0	10.0	6.5	6.5	8.0
S7	17.5	0.5	1.5	16.0	35.5	0.0	2.0	0.0	1.0
S9	25.5	0.5	7.0	35.5	48.0	0.5	8.0	4.0	2.5
S6	0.0	2.5	10.0	0.0	0.5	0.0	1.5	0.5	1.0
S2	2.5	0.5	6.5	2.0	8.0	1.5	75.0	85.5	76.5
S1	2.5	0.0	6.5	0.0	4.0	0.5	85.5	74.0	74.5
S3	3.0	0.0	8.0	1.0	2.5	1.0	76.5	74.5	80.0

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	4.220	0.000	0.000	3.9900	3.2700	0.000	0.163	0.170	0.2050
S5	0.000	26.900	4.810	0.4840	0.2730	11.200	0.139	0.000	0.0000
S4	0.000	4.810	6.300	0.2600	0.6820	8.010	0.323	0.337	0.4160
S7	3.990	0.484	0.260	3.3500	4.1800	0.000	0.120	0.000	0.0629
S9	3.270	0.273	0.682	4.1800	3.1800	0.273	0.270	0.141	0.0885
S6	0.000	11.200	8.010	0.0000	0.2730	0.000	0.417	0.145	0.2910
S2	0.163	0.139	0.323	0.1200	0.2700	0.417	1.290	1.540	1.3800
S1	0.170	0.000	0.337	0.0000	0.1410	0.145	1.540	1.390	1.4000
S3	0.205	0.000	0.416	0.0629	0.0885	0.291	1.380	1.400	1.5100

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

Bianca Ty1-RH Bianca Ty1-RH 4 0.013

clusters connected through mates:

Cluster	Number of shared read pairs	k

331	12	0.17
2660	4	0.086
2780	4	0.0825
2300	2	0.0426
6120	2	0.043
12000	2	0.044
12000	2	0.044
13000	2	0.044
15800	2	0.044
52000	2	0.0444
4	1	0.000609
8	1	0.000538
57	1	0.00119
205	1	0.0093
1460	1	0.0206
2820	1	0.022
5800	1	0.0215
9820	1	0.0217
12100	1	0.022
14400	1	0.0225
33800	1	0.0222
58400	1	0.0222
62600	1	0.0222

CL262 ----> CL331

No. of shared pairs: :12