Cluster no. 261

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Cluster is part of supercluster: 159

Cluster characteristics:

size 325
size_real 325
ecount 1973
supercluster 159
annotations_summary 1.85% Class_I/LTR/Ty1_copia/Angela:Ty1-RT
0.31% Class_I/LTR/Ty1_copia/Angela:Ty1-RH
pair_completeness 0.540284360189573
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00307692307692308
satellite_probability 1.65508917325132e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 85
S5 1
S4 0
S7 112
S9 123
S6 2
S2 0
S1 0
S3 2
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 133.0 0.5 0 158.0 182.0 1.0 0 0 6.0
S5 0.5 0.0 0 2.0 0.5 0.5 0 0 0.0
S4 0.0 0.0 0 0.0 0.0 0.0 0 0 0.0
S7 158.0 2.0 0 226.0 266.0 4.5 0 0 9.0
S9 182.0 0.5 0 266.0 325.0 0.5 0 0 13.5
S6 1.0 0.5 0 4.5 0.5 0.0 0 0 0.0
S2 0.0 0.0 0 0.0 0.0 0.0 0 0 0.0
S1 0.0 0.0 0 0.0 0.0 0.0 0 0 0.0
S3 6.0 0.0 0 9.0 13.5 0.0 0 0 0.0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 1.130 0.586 NA 0.974 0.950 0.631 NA NA 0.864
S5 0.586 0.000 NA 1.690 0.358 43.400 NA NA 0.000
S4 NA NA NA NA NA NA NA NA NA
S7 0.974 1.690 NA 1.010 1.000 2.050 NA NA 0.936
S9 0.950 0.358 NA 1.000 1.030 0.193 NA NA 1.190
S6 0.631 43.400 NA 2.050 0.193 0.000 NA NA 0.000
S2 NA NA NA NA NA NA NA NA NA
S1 NA NA NA NA NA NA NA NA NA
S3 0.864 0.000 NA 0.936 1.190 0.000 NA NA 0.000

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Angela Ty1-RH Angela Ty1-RH 1 0.0031
Angela Ty1-RT Angela Ty1-RT 6 0.0185

clusters connected through mates:

Cluster Number of shared
read pairs		 k
4750 4 0.0777
4 2 0.00122
30900 2 0.0404
40900 2 0.0404
5 1 0.000524
11 1 0.000775
22 1 0.000597
53 1 0.00165
75 1 0.00153
106 1 0.00221
162 1 0.00182
265 1 0.00909
1830 1 0.0182
8210 1 0.0202
36600 1 0.0202
42000 1 0.0202