Cluster no. 260

Cluster no. 260

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Cluster is part of supercluster: 158

Cluster characteristics:

size	336
size_real	336
ecount	480
supercluster	158
annotations_summary
pair_completeness	0.344
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00297619047619048
satellite_probability	9.7548493215956e-21
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	0
S5	0
S4	0
S7	0
S9	0
S6	1
S2	124
S1	115
S3	96

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	0	0	0	0	0	0.0	0.0	0	0.0
S5	0	0	0	0	0	0.0	0.0	0	0.0
S4	0	0	0	0	0	0.0	0.0	0	0.0
S7	0	0	0	0	0	0.0	0.0	0	0.0
S9	0	0	0	0	0	0.0	0.0	0	0.0
S6	0	0	0	0	0	0.0	0.5	1	0.5
S2	0	0	0	0	0	0.5	106.0	98	72.5
S1	0	0	0	0	0	1.0	98.0	92	69.0
S3	0	0	0	0	0	0.5	72.5	69	37.0

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	NA	NA	NA	NA	NA	NA	NA	NA	NA
S5	NA	NA	NA	NA	NA	NA	NA	NA	NA
S4	NA	NA	NA	NA	NA	NA	NA	NA	NA
S7	NA	NA	NA	NA	NA	NA	NA	NA	NA
S9	NA	NA	NA	NA	NA	NA	NA	NA	NA
S6	NA	NA	NA	NA	NA	0.000	0.648	1.380	1.000
S2	NA	NA	NA	NA	NA	0.648	0.992	0.977	1.050
S1	NA	NA	NA	NA	NA	1.380	0.977	0.977	1.060
S3	NA	NA	NA	NA	NA	1.000	1.050	1.060	0.829

protein domains:

No protein domains detected

protein domains:

Reads annotation summary

No similarity hits to repeat databases found

clusters with similarity:

Cluster	Number of similarity hits

27	11
58	7
38	5

clusters connected through mates:

Cluster	Number of shared read pairs	k

27	30	0.0315
58	19	0.0289
38	16	0.0144
64	8	0.00882
1150	4	0.0457
42	2	0.00301
5060	2	0.0235
5330	2	0.0235
6120	2	0.0237
26300	2	0.0241
46300	2	0.0241
60700	2	0.0241
3200	1	0.0116
5820	1	0.0121
6640	1	0.012
7600	1	0.0119
44200	1	0.012
49100	1	0.012

CL260 ----> CL27

No. of shared pairs: :30

CL260 ----> CL58

No. of shared pairs: :19

CL260 ----> CL38

No. of shared pairs: :16