Cluster no. 259

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Cluster is part of supercluster: 157

Cluster characteristics:

size 337
size_real 337
ecount 1518
supercluster 157
annotations_summary
pair_completeness 0.635922330097087
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0029673590504451
satellite_probability 4.28947468612038e-22
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 0
S5 124
S4 107
S7 0
S9 0
S6 106
S2 0
S1 0
S3 0
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0 0 0 0 0 0 0 0 0
S5 0 200 172 0 0 189 0 0 0
S4 0 172 150 0 0 154 0 0 0
S7 0 0 0 0 0 0 0 0 0
S9 0 0 0 0 0 0 0 0 0
S6 0 189 154 0 0 137 0 0 0
S2 0 0 0 0 0 0 0 0 0
S1 0 0 0 0 0 0 0 0 0
S3 0 0 0 0 0 0 0 0 0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 NA NA NA NA NA NA NA NA NA
S5 NA 0.963 0.979 NA NA 1.060 NA NA NA
S4 NA 0.979 1.000 NA NA 1.020 NA NA NA
S7 NA NA NA NA NA NA NA NA NA
S9 NA NA NA NA NA NA NA NA NA
S6 NA 1.060 1.020 NA NA 0.903 NA NA NA
S2 NA NA NA NA NA NA NA NA NA
S1 NA NA NA NA NA NA NA NA NA
S3 NA NA NA NA NA NA NA NA NA

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters with similarity:

Cluster Number of similarity hits
28 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
28 8 0.00746
1620 4 0.0941
9130 3 0.0759
186 2 0.014
19500 2 0.0513
1730 1 0.025
4010 1 0.0244
8450 1 0.0253
9050 1 0.026
9410 1 0.026
9790 1 0.0253
11400 1 0.0263
15300 1 0.0256
23600 1 0.026
28500 1 0.026
30100 1 0.026
34000 1 0.026
48300 1 0.026
55000 1 0.026
55900 1 0.026
59500 1 0.026