Cluster no. 258

Go back to cluster table

Cluster is part of supercluster: 156

Cluster characteristics:

size 337
size_real 337
ecount 1373
supercluster 156
annotations_summary 35.61% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RT
16.32% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-PROT
2.67% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RT
0.30% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-PROT
0.30% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-RT
0.30% Class_I/LTR/Ty3_gypsy/chromovirus/chromo-unclass:Ty3-RT
pair_completeness 0.545871559633027
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0029673590504451
satellite_probability 1.46614129999921e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 0
S5 118
S4 107
S7 0
S9 2
S6 110
S2 0
S1 0
S3 0
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0 0 0.0 0 0.0 0.0 0 0 0
S5 0 157 157.0 0 5.0 140.0 0 0 0
S4 0 157 165.0 0 4.5 148.0 0 0 0
S7 0 0 0.0 0 0.0 0.0 0 0 0
S9 0 5 4.5 0 1.0 6.5 0 0 0
S6 0 140 148.0 0 6.5 129.0 0 0 0
S2 0 0 0.0 0 0.0 0.0 0 0 0
S1 0 0 0.0 0 0.0 0.0 0 0 0
S3 0 0 0.0 0 0.0 0.0 0 0 0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 NA NA NA NA NA NA NA NA NA
S5 NA 1.020 0.991 NA 0.880 0.99 NA NA NA
S4 NA 0.991 1.010 NA 0.767 1.01 NA NA NA
S7 NA NA NA NA NA NA NA NA NA
S9 NA 0.880 0.767 NA 4.750 1.24 NA NA NA
S6 NA 0.990 1.010 NA 1.240 0.99 NA NA NA
S2 NA NA NA NA NA NA NA NA NA
S1 NA NA NA NA NA NA NA NA NA
S3 NA NA NA NA NA NA NA NA NA

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Galadriel Ty3-PROT Galadriel Ty3-PROT 1 0.003
Tekay Ty3-PROT Tekay Ty3-PROT 55 0.163
CRM Ty3-RT CRM Ty3-RT 1 0.003
Reina Ty3-RT Reina Ty3-RT 9 0.027
Tekay Ty3-RT Tekay Ty3-RT 120 0.356
chromo-unclass Ty3-RT chromo-unclass Ty3-RT 1 0.003

clusters connected through mates:

Cluster Number of shared
read pairs		 k
178 14 0.0587
272 14 0.135
858 3 0.0561
1560 3 0.0571
3240 2 0.0374
4430 2 0.0381
6770 2 0.0392
63600 2 0.0396
68700 2 0.0396
1 1 0.000566
35 1 0.000974
52 1 0.00166
90 1 0.00139
220 1 0.00637
12200 1 0.0196
13200 1 0.02
13300 1 0.0196
16400 1 0.02
23200 1 0.0198
28000 1 0.0198
44500 1 0.0198
45300 1 0.0198

CL258 ----> CL178

image

No. of shared pairs: :14

CL258 ----> CL272

image

No. of shared pairs: :14