Cluster no. 257

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Cluster is part of supercluster: 155

Cluster characteristics:

size 352
size_real 352
ecount 1739
supercluster 155
annotations_summary
pair_completeness 0.571428571428571
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0397727272727273
satellite_probability 3.46613853473934e-19
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 0
S5 98
S4 134
S7 2
S9 0
S6 118
S2 0
S1 0
S3 0
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0 0.0 0 0.0 0 0 0 0 0
S5 0 129.0 193 3.5 0 156 0 0 0
S4 0 193.0 263 2.0 0 232 0 0 0
S7 0 3.5 2 0.0 0 3 0 0 0
S9 0 0.0 0 0.0 0 0 0 0 0
S6 0 156.0 232 3.0 0 169 0 0 0
S2 0 0.0 0 0.0 0 0 0 0 0
S1 0 0.0 0 0.0 0 0 0 0 0
S3 0 0.0 0 0.0 0 0 0 0 0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 NA NA NA NA NA NA NA NA NA
S5 NA 0.97 1.010 1.490 NA 1.000 NA NA NA
S4 NA 1.01 0.961 0.593 NA 1.050 NA NA NA
S7 NA 1.49 0.593 0.000 NA 1.100 NA NA NA
S9 NA NA NA NA NA NA NA NA NA
S6 NA 1.00 1.050 1.100 NA 0.939 NA NA NA
S2 NA NA NA NA NA NA NA NA NA
S1 NA NA NA NA NA NA NA NA NA
S3 NA NA NA NA NA NA NA NA NA

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters connected through mates:

Cluster Number of shared
read pairs		 k
313 9 0.144
299 8 0.119
864 8 0.151
2 3 0.00188
19 2 0.00114
141 2 0.00891
16600 2 0.0404
56100 2 0.0408
3 1 0.000349
14 1 0.000604
41 1 0.00157
43 1 0.000766
52 1 0.00167
62 1 0.00214
93 1 0.00142
123 1 0.00161
186 1 0.00651
423 1 0.0168
1750 1 0.0198
3930 1 0.0198
5410 1 0.02
7700 1 0.02
9860 1 0.02
10700 1 0.0204
13300 1 0.0202
14300 1 0.0202
17500 1 0.0202
18800 1 0.0202
46900 1 0.0204
66400 1 0.0204