Cluster no. 255

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Cluster is part of supercluster: 153

Cluster characteristics:

size	367
size_real	367
ecount	1453
supercluster	153
annotations_summary	16.35% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-PROT 6.27% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-GAG 0.27% Class_I/LTR/Ty1_copia/Ale:Ty1-RT 0.27% Class_I/LTR/Ty1_copia/Ale:Ty1-INT
pair_completeness	0.660633484162896
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00272479564032698
satellite_probability	3.15659983381055e-22
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	24
S5	108
S4	108
S7	21
S9	19
S6	87
S2	0
S1	0
S3	0

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6
S8	31.0	0.5	0	30.5	22.5	0
S5	0.5	141.0	134	0.5	0.5	138
S4	0.0	134.0	146	0.0	0.0	144
S7	30.5	0.5	0	19.0	23.0	0
S9	22.5	0.5	0	23.0	14.0	0
S6	0.0	138.0	144	0.0	0.0	114
S2	0.0	0.0	0	0.0	0.0	0
S1	0.0	0.0	0	0.0	0.0	0
S3	0.0	0.0	0	0.0	0.0	0

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	6.3100	0.0207	0.00	7.180	6.4500	0.00	NA	NA	NA
S5	0.0207	1.1900	1.11	0.024	0.0292	1.22	NA	NA	NA
S4	0.0000	1.1100	1.18	0.000	0.0000	1.24	NA	NA	NA
S7	7.1800	0.0240	0.00	5.180	7.6300	0.00	NA	NA	NA
S9	6.4500	0.0292	0.00	7.630	5.6500	0.00	NA	NA	NA
S6	0.0000	1.2200	1.24	0.000	0.0000	1.06	NA	NA	NA
S2	NA	NA	NA	NA	NA	NA	NA	NA	NA
S1	NA	NA	NA	NA	NA	NA	NA	NA	NA
S3	NA	NA	NA	NA	NA	NA	NA	NA	NA

protein domains:

Reads annotation summary

cl_string domain Freq proportion

Ale Ty1-INT Ale Ty1-INT 1 0.0027

Ale Ty1-RT Ale Ty1-RT 1 0.0027

Athila Ty3-GAG Athila Ty3-GAG 23 0.0627

Athila Ty3-PROT Athila Ty3-PROT 60 0.1635

clusters with similarity:

Cluster	Number of similarity hits

clusters connected through mates:

Cluster	Number of shared read pairs	k

194	13	0.0963
460	11	0.21
642	4	0.0909
3	2	7e-04
34	2	0.00165
88	2	0.0029
13700	2	0.0513
59600	2	0.0519
2	1	0.000631
14	1	0.000608
20	1	0.00105
72	1	0.00144
100	1	0.00215
128	1	0.00152
2540	1	0.0241
2800	1	0.0244
5180	1	0.0247
15000	1	0.0256
59800	1	0.026

CL255 ----> CL194

No. of shared pairs: :13

CL255 ----> CL460

No. of shared pairs: :11