Cluster no. 254

Go back to cluster table

Cluster is part of supercluster: 152

Cluster characteristics:

size 369
size_real 369
ecount 1409
supercluster 152
annotations_summary 36.04% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RH
21.14% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RT
2.71% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-PROT
0.27% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RH
0.27% Class_I/LTR/Ty3_gypsy/chromovirus/Chlamyvir:Ty3-RT
0.27% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RT
0.27% Class_I/pararetrovirus:PARA-RT
pair_completeness 0.556962025316456
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.002710027100271
satellite_probability 1.29477276776204e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 0
S5 123
S4 123
S7 0
S9 0
S6 122
S2 1
S1 0
S3 0
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0 0 0.0 0 0 0.0 0.0 0 0
S5 0 147 157.0 0 0 152.0 1.0 0 0
S4 0 157 173.0 0 0 174.0 0.5 0 0
S7 0 0 0.0 0 0 0.0 0.0 0 0
S9 0 0 0.0 0 0 0.0 0.0 0 0
S6 0 152 174.0 0 0 119.0 1.5 0 0
S2 0 1 0.5 0 0 1.5 0.0 0 0
S1 0 0 0.0 0 0 0.0 0.0 0 0
S3 0 0 0.0 0 0 0.0 0.0 0 0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 NA NA NA NA NA NA NA NA NA
S5 NA 0.994 0.961 NA NA 1.050 1.030 NA NA
S4 NA 0.961 0.960 NA NA 1.090 0.466 NA NA
S7 NA NA NA NA NA NA NA NA NA
S9 NA NA NA NA NA NA NA NA NA
S6 NA 1.050 1.090 NA NA 0.845 1.580 NA NA
S2 NA 1.030 0.466 NA NA 1.580 0.000 NA NA
S1 NA NA NA NA NA NA NA NA NA
S3 NA NA NA NA NA NA NA NA NA

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
pararetrovirus PARA-RT pararetrovirus PARA-RT 1 0.0027
Tekay Ty3-PROT Tekay Ty3-PROT 10 0.0271
Reina Ty3-RH Reina Ty3-RH 1 0.0027
Tekay Ty3-RH Tekay Ty3-RH 133 0.3604
Chlamyvir Ty3-RT Chlamyvir Ty3-RT 1 0.0027
Reina Ty3-RT Reina Ty3-RT 1 0.0027
Tekay Ty3-RT Tekay Ty3-RT 78 0.2114

clusters connected through mates:

Cluster Number of shared
read pairs		 k
1020 9 0.151
308 7 0.0864
325 7 0.101
1940 3 0.0531
1200 2 0.0348
1440 2 0.0345
5140 2 0.0367
6720 2 0.037
7880 2 0.0367
58600 2 0.0374
33 1 0.000552
80 1 0.00126
84 1 0.00125
3830 1 0.0179
9060 1 0.0187
9260 1 0.0187
9500 1 0.0183
10800 1 0.0183
47000 1 0.0187
57600 1 0.0187
70700 1 0.0187