Cluster no. 253

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Cluster is part of supercluster: 151

Cluster characteristics:

size 369
size_real 369
ecount 1369
supercluster 151
annotations_summary
pair_completeness 0.506122448979592
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.002710027100271
satellite_probability 2.33736515693784e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 121
S5 0
S4 0
S7 118
S9 128
S6 0
S2 2
S1 0
S3 0
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 150 0 0 146 160.0 0 4.0 0 0
S5 0 0 0 0 0.0 0 0.0 0 0
S4 0 0 0 0 0.0 0 0.0 0 0
S7 146 0 0 147 146.0 0 2.0 0 0
S9 160 0 0 146 151.0 0 2.5 0 0
S6 0 0 0 0 0.0 0 0.0 0 0
S2 4 0 0 2 2.5 0 0.0 0 0
S1 0 0 0 0 0.0 0 0.0 0 0
S3 0 0 0 0 0.0 0 0.0 0 0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0.968 NA NA 0.985 1.040 NA 1.400 NA NA
S5 NA NA NA NA NA NA NA NA NA
S4 NA NA NA NA NA NA NA NA NA
S7 0.985 NA NA 1.040 0.984 NA 0.731 NA NA
S9 1.040 NA NA 0.984 0.979 NA 0.876 NA NA
S6 NA NA NA NA NA NA NA NA NA
S2 1.400 NA NA 0.731 0.876 NA 0.000 NA NA
S1 NA NA NA NA NA NA NA NA NA
S3 NA NA NA NA NA NA NA NA NA

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters connected through mates:

Cluster Number of shared
read pairs		 k
163 17 0.133
2520 7 0.109
8 3 0.0016
12 3 0.0024
107 3 0.00476
9810 3 0.048
17 2 0.00119
18 2 0.00152
36 2 0.002
79 2 0.00733
4570 2 0.0315
16500 2 0.0323
27600 2 0.0325
30200 2 0.0325
35700 2 0.0325
4 1 0.000603
11 1 0.000768
21 1 0.00186
65 1 0.00215
75 1 0.0015
83 1 0.0023
114 1 0.00245
136 1 0.00142
172 1 0.00816
1240 1 0.0144
2590 1 0.0155
4390 1 0.0157
10500 1 0.016
11500 1 0.0161
11800 1 0.0161
25200 1 0.0163
27100 1 0.0163
43200 1 0.0163
43600 1 0.0163
64000 1 0.0163

CL253 ----> CL163

image

No. of shared pairs: :17