Cluster no. 252

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Cluster is part of supercluster: 150

Cluster characteristics:

size 375
size_real 375
ecount 7056
supercluster 150
annotations_summary 0.27% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RT
0.27% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
pair_completeness 0.399253731343284
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00266666666666667
satellite_probability 6.52979343237575e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 3
S5 111
S4 129
S7 3
S9 3
S6 126
S2 0
S1 0
S3 0
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 1.0 0 0.5 0.5 1.5 0.0 0 0 0
S5 0.0 569 710.0 0.0 0.0 720.0 0 0 0
S4 0.5 710 918.0 0.0 0.0 919.0 0 0 0
S7 0.5 0 0.0 1.0 0.5 0.0 0 0 0
S9 1.5 0 0.0 0.5 1.0 0.5 0 0 0
S6 0.0 720 919.0 0.0 0.5 861.0 0 0 0
S2 0.0 0 0.0 0.0 0.0 0.0 0 0 0
S1 0.0 0 0.0 0.0 0.0 0.0 0 0 0
S3 0.0 0 0.0 0.0 0.0 0.0 0 0 0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 576.000 0.000 0.396 504 864.000 0.000 NA NA NA
S5 0.000 1.000 0.983 0 0.000 1.020 NA NA NA
S4 0.396 0.983 0.998 0 0.000 1.020 NA NA NA
S7 504.000 0.000 0.000 1760 504.000 0.000 NA NA NA
S9 864.000 0.000 0.000 504 576.000 0.403 NA NA NA
S6 0.000 1.020 1.020 0 0.403 0.971 NA NA NA
S2 NA NA NA NA NA NA NA NA NA
S1 NA NA NA NA NA NA NA NA NA
S3 NA NA NA NA NA NA NA NA NA

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Tekay Ty3-INT Tekay Ty3-INT 1 0.0027
TatV Ty3-RT TatV Ty3-RT 1 0.0027

clusters connected through mates:

Cluster Number of shared
read pairs		 k
61 3 0.00327
10 2 0.0012
15 2 0.00085
43 2 0.00149
109 2 0.00369
112 2 0.00483
126 2 0.00408
15500 2 0.0244
1 1 0.000556
3 1 0.000345
9 1 0.00129
13 1 0.000624
16 1 0.00168
20 1 0.00101
24 1 0.00143
31 1 0.0012
33 1 0.000544
35 1 0.000946
41 1 0.00149
47 1 0.00097
56 1 0.00143
71 1 0.000991
87 1 0.00142
89 1 0.00181
93 1 0.00136
95 1 0.00159
99 1 0.00166
117 1 0.00223
120 1 0.00208
130 1 0.00206
141 1 0.00389
185 1 0.00279
211 1 0.00384
220 1 0.00532
241 1 0.00647
266 1 0.00901
369 1 0.00844
409 1 0.0106
1070 1 0.0112
1080 1 0.0119
1100 1 0.0114
2280 1 0.0118
3090 1 0.012
5260 1 0.0121
5820 1 0.012
6330 1 0.0122
6360 1 0.012
9940 1 0.0121
17200 1 0.0122
41200 1 0.0123
63500 1 0.0123
64700 1 0.0123
70500 1 0.0123