Cluster no. 251

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Cluster is part of supercluster: 149

Cluster characteristics:

size 399
size_real 399
ecount 1319
supercluster 149
annotations_summary
pair_completeness 0.380622837370242
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0025062656641604
satellite_probability 7.55887620545779e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 148
S5 1
S4 0
S7 128
S9 120
S6 1
S2 1
S1 0
S3 0
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 222.0 3.0 0 162.0 150.0 0.5 0.0 0 0
S5 3.0 0.0 0 3.5 0.5 0.0 0.0 0 0
S4 0.0 0.0 0 0.0 0.0 0.0 0.0 0 0
S7 162.0 3.5 0 132.0 112.0 0.0 0.5 0 0
S9 150.0 0.5 0 112.0 100.0 0.0 0.0 0 0
S6 0.5 0.0 0 0.0 0.0 0.0 0.0 0 0
S2 0.0 0.0 0 0.5 0.0 0.0 0.0 0 0
S1 0.0 0.0 0 0.0 0.0 0.0 0.0 0 0
S3 0.0 0.0 0 0.0 0.0 0.0 0.0 0 0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 1.010 1.050 NA 0.967 1.020 2.45 0.00 NA NA
S5 1.050 0.000 NA 1.610 0.259 0.00 0.00 NA NA
S4 NA NA NA NA NA NA NA NA NA
S7 0.967 1.610 NA 1.040 0.996 0.00 3.22 NA NA
S9 1.020 0.259 NA 0.996 0.998 0.00 0.00 NA NA
S6 2.450 0.000 NA 0.000 0.000 0.00 0.00 NA NA
S2 0.000 0.000 NA 3.220 0.000 0.00 0.00 NA NA
S1 NA NA NA NA NA NA NA NA NA
S3 NA NA NA NA NA NA NA NA NA

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters with similarity:

Cluster Number of similarity hits
68 2

clusters connected through mates:

Cluster Number of shared
read pairs		 k
68 11 0.0125
206 4 0.0148
2370 3 0.0324
3180 3 0.0321
4350 3 0.0324
11100 2 0.022
11800 2 0.022
48200 2 0.0221
62200 2 0.0221
12 1 0.000781
36 1 0.00097
51 1 0.000771
91 1 0.00134
186 1 0.00513
265 1 0.00662
1830 1 0.0104
1850 1 0.0105
4400 1 0.0109
4900 1 0.0108
14100 1 0.0111
21300 1 0.011
33200 1 0.011
58000 1 0.011

CL251 ----> CL68

image

No. of shared pairs: :11