Cluster no. 250

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Cluster is part of supercluster: 148

Cluster characteristics:

size 399
size_real 399
ecount 2232
supercluster 148
annotations_summary 15.04% Class_I/LTR/Ty1_copia/Tork:Ty1-RT
13.53% Class_I/LTR/Ty1_copia/Tork:Ty1-INT
9.77% Class_I/LTR/Ty1_copia/Tork:Ty1-RH
7.77% Class_I/LTR/Ty1_copia/Tork:Ty1-GAG
5.51% Class_I/LTR/Ty1_copia/Tork:Ty1-PROT
3.26% organelle/mitochondria
1.25% Class_I/LTR/Ty1_copia/Ivana:Ty1-RH
0.50% Class_I/LTR/Ty1_copia/Ikeros:Ty1-RT
pair_completeness 0.838709677419355
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0025062656641604
satellite_probability 1.1655040537334e-23
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 0
S5 130
S4 118
S7 0
S9 0
S6 151
S2 0
S1 0
S3 0
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0 0 0 0 0 0 0 0 0
S5 0 237 212 0 0 275 0 0 0
S4 0 212 215 0 0 252 0 0 0
S7 0 0 0 0 0 0 0 0 0
S9 0 0 0 0 0 0 0 0 0
S6 0 275 252 0 0 302 0 0 0
S2 0 0 0 0 0 0 0 0 0
S1 0 0 0 0 0 0 0 0 0
S3 0 0 0 0 0 0 0 0 0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 NA NA NA NA NA NA NA NA NA
S5 NA 1.010 0.961 NA NA 1.02 NA NA NA
S4 NA 0.961 1.040 NA NA 1.00 NA NA NA
S7 NA NA NA NA NA NA NA NA NA
S9 NA NA NA NA NA NA NA NA NA
S6 NA 1.020 1.000 NA NA 0.98 NA NA NA
S2 NA NA NA NA NA NA NA NA NA
S1 NA NA NA NA NA NA NA NA NA
S3 NA NA NA NA NA NA NA NA NA

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
mitochondria mitochondria 13 0.033
Tork Ty1-GAG Tork Ty1-GAG 31 0.078
Tork Ty1-INT Tork Ty1-INT 54 0.135
Tork Ty1-PROT Tork Ty1-PROT 22 0.055
Ivana Ty1-RH Ivana Ty1-RH 5 0.013
Tork Ty1-RH Tork Ty1-RH 39 0.098
Ikeros Ty1-RT Ikeros Ty1-RT 2 0.005
Tork Ty1-RT Tork Ty1-RT 60 0.150

clusters connected through mates:

Cluster Number of shared
read pairs		 k
61 1 0.00117
88 1 0.00149
95 1 0.00177
57500 1 0.0541