Cluster no. 249

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Cluster is part of supercluster: 147

Cluster characteristics:

size 404
size_real 404
ecount 2282
supercluster 147
annotations_summary
pair_completeness 0.719148936170213
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00247524752475248
satellite_probability 1.17014641654426e-22
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 0
S5 0
S4 0
S7 2
S9 0
S6 0
S2 118
S1 129
S3 155
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0 0 0 0.0 0 0 0.0 0.0 0
S5 0 0 0 0.0 0 0 0.0 0.0 0
S4 0 0 0 0.0 0 0 0.0 0.0 0
S7 0 0 0 0.0 0 0 2.5 4.5 6
S9 0 0 0 0.0 0 0 0.0 0.0 0
S6 0 0 0 0.0 0 0 0.0 0.0 0
S2 0 0 0 2.5 0 0 234.0 218.0 256
S1 0 0 0 4.5 0 0 218.0 210.0 252
S3 0 0 0 6.0 0 0 256.0 252.0 360
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 NA NA NA NA NA NA NA NA NA
S5 NA NA NA NA NA NA NA NA NA
S4 NA NA NA NA NA NA NA NA NA
S7 NA NA NA 0.000 NA NA 0.618 1.150 1.210
S9 NA NA NA NA NA NA NA NA NA
S6 NA NA NA NA NA NA NA NA NA
S2 NA NA NA 0.618 NA NA 1.060 1.020 0.941
S1 NA NA NA 1.150 NA NA 1.020 1.020 0.961
S3 NA NA NA 1.210 NA NA 0.941 0.961 1.080

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters connected through mates:

Cluster Number of shared
read pairs		 k
129 13 0.0488
1150 6 0.141
2440 5 0.132
3000 4 0.113
42 2 0.00325
57 1 0.0012
85 1 0.00185
113 1 0.00241
168 1 0.00296
175 1 0.00436
311 1 0.0127
6380 1 0.0282
7270 1 0.0282

CL249 ----> CL129

image

No. of shared pairs: :13