Cluster no. 248

Cluster no. 248

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Cluster is part of supercluster: 146

Cluster characteristics:

size	407
size_real	407
ecount	3729
supercluster	146
annotations_summary	0.25% Class_I/LINE:LINE-RT
pair_completeness	0.490842490842491
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00245700245700246
satellite_probability	2.89707838193454e-21
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	136
S5	0
S4	0
S7	138
S9	133
S6	0
S2	0
S1	0
S3	0

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	419	0	0	420	410	0	0	0	0
S5	0	0	0	0	0	0	0	0	0
S4	0	0	0	0	0	0	0	0	0
S7	420	0	0	406	428	0	0	0	0
S9	410	0	0	428	391	0	0	0	0
S6	0	0	0	0	0	0	0	0	0
S2	0	0	0	0	0	0	0	0	0
S1	0	0	0	0	0	0	0	0	0
S3	0	0	0	0	0	0	0	0	0

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	1.000	NA	NA	1.000	0.996	NA	NA	NA	NA
S5	NA	NA	NA	NA	NA	NA	NA	NA	NA
S4	NA	NA	NA	NA	NA	NA	NA	NA	NA
S7	1.000	NA	NA	0.964	1.040	NA	NA	NA	NA
S9	0.996	NA	NA	1.040	0.967	NA	NA	NA	NA
S6	NA	NA	NA	NA	NA	NA	NA	NA	NA
S2	NA	NA	NA	NA	NA	NA	NA	NA	NA
S1	NA	NA	NA	NA	NA	NA	NA	NA	NA
S3	NA	NA	NA	NA	NA	NA	NA	NA	NA

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

LINE LINE-RT LINE LINE-RT 1 0.0025

clusters with similarity:

Cluster	Number of similarity hits

5	48
51	19
91	18
69	8
27	4

clusters connected through mates:

Cluster	Number of shared read pairs	k

91	37	0.051
51	17	0.0133
69	8	0.00671
8	5	0.00265
157	3	0.00624
17	2	0.00119
2640	2	0.0282
5	1	0.000518
12	1	0.000793
22	1	0.000589
59	1	0.000804
78	1	0.000862
83	1	0.00225
107	1	0.00156
213	1	0.00463
6560	1	0.0139
16600	1	0.0141
17800	1	0.0141
43000	1	0.0142

CL248 ----> CL91

No. of shared pairs: :37

CL248 ----> CL51

No. of shared pairs: :17