Cluster no. 247

Cluster no. 247

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Cluster is part of supercluster: 145

Cluster characteristics:

size	411
size_real	411
ecount	5472
supercluster	145
annotations_summary	0.49% organelle/plastid
pair_completeness	0.663967611336032
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.0924574209245742
satellite_probability	3.79314690385034e-17
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	139
S5	2
S4	0
S7	138
S9	128
S6	0
S2	4
S1	0
S3	0

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	598.0	6.5	0	620.0	544.0	0	10.0	0	0
S5	6.5	0.0	0	8.0	8.5	0	0.0	0	0
S4	0.0	0.0	0	0.0	0.0	0	0.0	0	0
S7	620.0	8.0	0	685.0	601.0	0	11.5	0	0
S9	544.0	8.5	0	601.0	543.0	0	14.5	0	0
S6	0.0	0.0	0	0.0	0.0	0	0.0	0	0
S2	10.0	0.0	0	11.5	14.5	0	0.0	0	0
S1	0.0	0.0	0	0.0	0.0	0	0.0	0	0
S3	0.0	0.0	0	0.0	0.0	0	0.0	0	0

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	1.040	0.870	NA	0.991	0.978	NA	0.855	NA	NA
S5	0.870	0.000	NA	0.989	1.180	NA	0.000	NA	NA
S4	NA	NA	NA	NA	NA	NA	NA	NA	NA
S7	0.991	0.989	NA	1.010	0.999	NA	0.908	NA	NA
S9	0.978	1.180	NA	0.999	1.020	NA	1.290	NA	NA
S6	NA	NA	NA	NA	NA	NA	NA	NA	NA
S2	0.855	0.000	NA	0.908	1.290	NA	0.000	NA	NA
S1	NA	NA	NA	NA	NA	NA	NA	NA	NA
S3	NA	NA	NA	NA	NA	NA	NA	NA	NA

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

plastid plastid 2 0.0049

clusters with similarity:

Cluster	Number of similarity hits

9	72
4	23

clusters connected through mates:

Cluster	Number of shared read pairs	k

9	41	0.0555
4	16	0.00976
5	2	0.00105
6320	2	0.0455
16600	2	0.0465
49200	2	0.0471
51	1	8e-04
102	1	0.00245
182	1	0.00467

CL247 ----> CL9

No. of shared pairs: :41

CL247 ----> CL4

No. of shared pairs: :16