Cluster no. 246

Cluster no. 246

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Cluster is part of supercluster: 144

Cluster characteristics:

size	437
size_real	437
ecount	2834
supercluster	144
annotations_summary	0.23% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
pair_completeness	0.405144694533762
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.0022883295194508
satellite_probability	6.04066957660451e-21
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	125
S5	0
S4	2
S7	167
S9	140
S6	1
S2	0
S1	1
S3	1

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	187.0	0	0.0	290.0	281.0	0.5	0	0.0	0
S5	0.0	0	0.0	0.0	0.0	0.0	0	0.0	0
S4	0.0	0	0.0	2.5	3.0	0.0	0	0.0	0
S7	290.0	0	2.5	392.0	376.0	1.0	0	0.5	1
S9	281.0	0	3.0	376.0	342.0	0.5	0	0.0	0
S6	0.5	0	0.0	1.0	0.5	0.0	0	0.0	0
S2	0.0	0	0.0	0.0	0.0	0.0	0	0.0	0
S1	0.0	0	0.0	0.5	0.0	0.0	0	0.0	0
S3	0.0	0	0.0	1.0	0.0	0.0	0	0.0	0

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	0.921	NA	0.00	1.020	1.050	0.934	NA	0.00	0.00
S5	NA	NA	NA	NA	NA	NA	NA	NA	NA
S4	0.000	NA	0.00	1.210	1.540	0.000	NA	0.00	0.00
S7	1.020	NA	1.21	0.982	1.000	1.330	NA	2.66	2.66
S9	1.050	NA	1.54	1.000	0.963	0.706	NA	0.00	0.00
S6	0.934	NA	0.00	1.330	0.706	0.000	NA	0.00	0.00
S2	NA	NA	NA	NA	NA	NA	NA	NA	NA
S1	0.000	NA	0.00	2.660	0.000	0.000	NA	0.00	0.00
S3	0.000	NA	0.00	2.660	0.000	0.000	NA	0.00	0.00

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

Tekay Ty3-INT Tekay Ty3-INT 1 0.0023

clusters connected through mates:

Cluster	Number of shared read pairs	k

21	16	0.0281
75	2	0.00286
617	2	0.0183
4280	2	0.0208
8140	2	0.0212
10200	2	0.0212
14500	2	0.0213
60500	2	0.0214
3	1	0.000343
4	1	0.000592
8	1	0.000524
9	1	0.00127
22	1	0.000581
54	1	0.00108
65	1	0.00201
83	1	0.00214
91	1	0.00134
106	1	0.00201
199	1	0.00538
209	1	0.00458
546	1	0.00917
2490	1	0.0105
5740	1	0.0105
7520	1	0.0106
10500	1	0.0107
19300	1	0.0106
29800	1	0.0107
37000	1	0.0107
37200	1	0.0107
42000	1	0.0107
42600	1	0.0107
46400	1	0.0107
55400	1	0.0107
61500	1	0.0107

CL246 ----> CL21

No. of shared pairs: :16