Cluster no. 245

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Cluster is part of supercluster: 143

Cluster characteristics:

size 449
size_real 449
ecount 3603
supercluster 143
annotations_summary 95.77% organelle/plastid
pair_completeness 0.855371900826446
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0022271714922049
satellite_probability 7.61231862084818e-24
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 27
S5 84
S4 119
S7 32
S9 16
S6 90
S2 24
S1 34
S3 23
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 13.0 38.5 60.5 14.5 8.0 46.0 10.5 13.5 9.5
S5 38.5 160.0 208.0 44.5 27.0 144.0 31.0 48.0 27.0
S4 60.5 208.0 270.0 59.0 32.5 216.0 40.5 61.0 41.5
S7 14.5 44.5 59.0 16.0 7.0 42.5 11.5 22.5 13.5
S9 8.0 27.0 32.5 7.0 6.0 22.0 7.5 9.5 2.5
S6 46.0 144.0 216.0 42.5 22.0 142.0 32.5 50.0 27.5
S2 10.5 31.0 40.5 11.5 7.5 32.5 14.0 21.0 9.0
S1 13.5 48.0 61.0 22.5 9.5 50.0 21.0 18.0 17.0
S3 9.5 27.0 41.5 13.5 2.5 27.5 9.0 17.0 11.0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 1.020 0.890 1.030 1.060 1.100 1.070 0.996 0.873 1.010
S5 0.890 1.090 1.040 0.953 1.090 0.989 0.864 0.911 0.842
S4 1.030 1.040 0.996 0.931 0.971 1.090 0.832 0.854 0.954
S7 1.060 0.953 0.931 1.080 0.895 0.917 1.010 1.350 1.330
S9 1.100 1.090 0.971 0.895 1.450 0.899 1.250 1.080 0.466
S6 1.070 0.989 1.090 0.917 0.899 0.980 0.913 0.957 0.865
S2 0.996 0.864 0.832 1.010 1.250 0.913 1.600 1.640 1.150
S1 0.873 0.911 0.854 1.350 1.080 0.957 1.640 0.956 1.480
S3 1.010 0.842 0.954 1.330 0.466 0.865 1.150 1.480 1.580

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 430 0.96

clusters with similarity:

Cluster Number of similarity hits
156 1
176 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
176 10 0.227
156 9 0.161
7 1 0.000687
135 1 0.00418
140 1 0.00217
215 1 0.025

CL245 ----> CL176

image

No. of shared pairs: :10