Cluster no. 244

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Cluster is part of supercluster: 31

Cluster characteristics:

size 473
size_real 473
ecount 9904
supercluster 31
annotations_summary 0.21% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
pair_completeness 0.805343511450382
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.484143763213531
satellite_probability 5.4834671701435e-06
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 155
S5 0
S4 0
S7 179
S9 135
S6 0
S2 4
S1 0
S3 0
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 970 0 0 1250 896.0 0 22.0 0 0
S5 0 0 0 0 0.0 0 0.0 0 0
S4 0 0 0 0 0.0 0 0.0 0 0
S7 1250 0 0 1530 1120.0 0 19.0 0 0
S9 896 0 0 1120 763.0 0 18.5 0 0
S6 0 0 0 0 0.0 0 0.0 0 0
S2 22 0 0 19 18.5 0 0.0 0 0
S1 0 0 0 0 0.0 0 0.0 0 0
S3 0 0 0 0 0.0 0 0.0 0 0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0.977 NA NA 1.010 1.010 NA 1.170 NA NA
S5 NA NA NA NA NA NA NA NA NA
S4 NA NA NA NA NA NA NA NA NA
S7 1.010 NA NA 0.989 1.010 NA 0.808 NA NA
S9 1.010 NA NA 1.010 0.967 NA 1.100 NA NA
S6 NA NA NA NA NA NA NA NA NA
S2 1.170 NA NA 0.808 1.100 NA 0.000 NA NA
S1 NA NA NA NA NA NA NA NA NA
S3 NA NA NA NA NA NA NA NA NA

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Tekay Ty3-INT Tekay Ty3-INT 1 0.0021

clusters with similarity:

Cluster Number of similarity hits
133 16
158 7

clusters connected through mates:

Cluster Number of shared
read pairs		 k
133 21 0.212
158 10 0.124
21 2 0.00398
54 1 0.00116
131 1 0.00274
206 1 0.00483

CL244 ----> CL133

image

No. of shared pairs: :21

CL244 ----> CL158

image

No. of shared pairs: :10