Cluster no. 243

Go back to cluster table

Cluster is part of supercluster: 142

Cluster characteristics:

size 479
size_real 479
ecount 1898
supercluster 142
annotations_summary 0.21% organelle/plastid
pair_completeness 0.473846153846154
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00208768267223382
satellite_probability 3.54668226065428e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 0
S5 0
S4 0
S7 1
S9 0
S6 0
S2 141
S1 191
S3 146
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0 0 0 0.0 0 0 0.0 0 0
S5 0 0 0 0.0 0 0 0.0 0 0
S4 0 0 0 0.0 0 0 0.0 0 0
S7 0 0 0 0.0 0 0 0.5 2 0
S9 0 0 0 0.0 0 0 0.0 0 0
S6 0 0 0 0.0 0 0 0.0 0 0
S2 0 0 0 0.5 0 0 171.0 243 144
S1 0 0 0 2.0 0 0 243.0 323 232
S3 0 0 0 0.0 0 0 144.0 232 161
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 NA NA NA NA NA NA NA NA NA
S5 NA NA NA NA NA NA NA NA NA
S4 NA NA NA NA NA NA NA NA NA
S7 NA NA NA 0.000 NA NA 0.679 1.900 0.000
S9 NA NA NA NA NA NA NA NA NA
S6 NA NA NA NA NA NA NA NA NA
S2 NA NA NA 0.679 NA NA 1.040 1.030 0.914
S1 NA NA NA 1.900 NA NA 1.030 0.959 1.020
S3 NA NA NA 0.000 NA NA 0.914 1.020 1.060

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 1 0.0021

clusters connected through mates:

Cluster Number of shared
read pairs		 k
1020 7 0.0749
1340 5 0.0535
3220 4 0.0447
8950 4 0.0457
1340 3 0.0321
1830 3 0.0337
7 2 0.00131
85 2 0.00338
524 2 0.0197
3490 2 0.0223
31100 2 0.0231
52700 2 0.0231
23 1 0.000822
148 1 0.00219
210 1 0.0034
340 1 0.00866
959 1 0.011
2140 1 0.011
3760 1 0.0114
5150 1 0.0113
12200 1 0.0115
13400 1 0.0116
15800 1 0.0115
31700 1 0.0116
32800 1 0.0116
33200 1 0.0116
33800 1 0.0116
38200 1 0.0116
46400 1 0.0116
49700 1 0.0116
58200 1 0.0116
58900 1 0.0116
63900 1 0.0116
66300 1 0.0116
67300 1 0.0116