Cluster no. 242

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Cluster is part of supercluster: 141

Cluster characteristics:

size 485
size_real 485
ecount 1420
supercluster 141
annotations_summary
pair_completeness 0.350974930362117
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0804123711340206
satellite_probability 1.666515693496e-16
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 0
S5 191
S4 128
S7 0
S9 0
S6 164
S2 0
S1 2
S3 0
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0 0 0 0 0 0 0 0 0
S5 0 223 158 0 0 191 0 0 0
S4 0 158 101 0 0 120 0 0 0
S7 0 0 0 0 0 0 0 0 0
S9 0 0 0 0 0 0 0 0 0
S6 0 191 120 0 0 154 0 1 0
S2 0 0 0 0 0 0 0 0 0
S1 0 0 0 0 0 1 0 1 0
S3 0 0 0 0 0 0 0 0 0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 NA NA NA NA NA NA NA NA NA
S5 NA 0.966 1.040 NA NA 1.020 NA 0.00 NA
S4 NA 1.040 0.996 NA NA 0.964 NA 0.00 NA
S7 NA NA NA NA NA NA NA NA NA
S9 NA NA NA NA NA NA NA NA NA
S6 NA 1.020 0.964 NA NA 1.010 NA 1.52 NA
S2 NA NA NA NA NA NA NA NA NA
S1 NA 0.000 0.000 NA NA 1.520 NA 355.00 NA
S3 NA NA NA NA NA NA NA NA NA

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters connected through mates:

Cluster Number of shared
read pairs
k
456 4 0.029
983 4 0.0316
123 2 0.0029
208 2 0.00664
5480 2 0.0169
6100 2 0.0169
7890 2 0.0169
1 1 0.000545
28 1 0.000868
86 1 0.00162
117 1 0.00206
141 1 0.00341
1180 1 0.008
1980 1 0.0083
7720 1 0.00851
8960 1 0.00844
9880 1 0.00844
13400 1 0.00847
14600 1 0.00847
14700 1 0.00855
15700 1 0.00847
17900 1 0.00847
20300 1 0.00851
24000 1 0.00851
28700 1 0.00851
30100 1 0.00851
50300 1 0.00851
54100 1 0.00851
59800 1 0.00851
68900 1 0.00851
69500 1 0.00851